Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022557.1:177270-183359[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0054 0.48 12.3 1.3 1 23 239 263 239 263 0.96

2 12 0.00022 0.02 16.7 1.0 3 23 269 290 268 290 0.93

3 12 1.4e-06 0.00012 23.6 1.3 3 23 299 319 297 319 0.96

4 12 1.1e-05 0.001 20.7 0.6 1 23 325 347 325 347 0.98

5 12 2.3e-06 0.00021 22.9 0.5 1 23 353 375 353 375 0.98

6 12 0.0001 0.009 17.7 1.7 1 23 381 403 381 403 0.98

7 12 5.6e-06 0.00051 21.7 1.4 1 23 409 431 409 431 0.98

8 12 0.00014 0.013 17.3 0.6 3 23 439 459 437 459 0.97

9 12 1.4e-06 0.00013 23.5 2.3 1 23 465 487 465 487 0.99

10 12 7.2e-07 6.5e-05 24.5 0.6 3 23 495 515 493 515 0.97

11 12 1.3e-06 0.00012 23.7 0.3 1 23 521 543 521 543 0.99

12 12 3e-06 0.00026 22.6 4.2 1 23 549 571 549 571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0054	0.48	12.3	1.3	1	23	239	263	239	263	0.96
2	12	0.00022	0.02	16.7	1.0	3	23	269	290	268	290	0.93
3	12	1.4e-06	0.00012	23.6	1.3	3	23	299	319	297	319	0.96
4	12	1.1e-05	0.001	20.7	0.6	1	23	325	347	325	347	0.98
5	12	2.3e-06	0.00021	22.9	0.5	1	23	353	375	353	375	0.98
6	12	0.0001	0.009	17.7	1.7	1	23	381	403	381	403	0.98
7	12	5.6e-06	0.00051	21.7	1.4	1	23	409	431	409	431	0.98
8	12	0.00014	0.013	17.3	0.6	3	23	439	459	437	459	0.97
9	12	1.4e-06	0.00013	23.5	2.3	1	23	465	487	465	487	0.99
10	12	7.2e-07	6.5e-05	24.5	0.6	3	23	495	515	493	515	0.97
11	12	1.3e-06	0.00012	23.7	0.3	1	23	521	543	521	543	0.99
12	12	3e-06	0.00026	22.6	4.2	1	23	549	571	549	571	0.98

Sequence Information

Coding Sequence: atgGCTTATGAAGCaatggattttgataaaatatgtaGAACTTGTTTGTCAGAATCTACAGATTTGAAAGATCTGTTTAGTGAGAATTTTATAACCGAGGAAAACTTAACTCTTTCTAAACTGCTATCGTCTTGTACATCTCTAGAGGTTTGTGAAAGTGATGGTTTTCCGAAGCAAGTATGTATGCAATGCATTCATTATATACTTAGCTTTTTTACCTTCCAACAGCAATGTCACAGATCCGACTCTACGTTAAGAGCTCTTATATCCGGGGCCTCATCAACTCAATATATAGAACTGAAACCAGTGGATAATATGATAGACAGTCCTGTAAGAATCCatgaaatattaagcaattcACCCTTGCAGATTGAAACACTAGAGGATACTCTAAATGACCAAGAAATAGTAGATAACTTTAGTAGTGATGTGGATAATTTAAATGATGACCCTGAAAATGTTCACATAGAAAAGAGGACTGCTGATTCTGTACTAAGTGAAAATACAGATGCTAACAATCCAAATAAGTTGGAAGATAAAGAGTTTGAAGTCAAATTAGGTTCTACTAATGagaaaatatttgacattaatATCAATGAAATAGATATTCAAGAAAGAGAATTGAAAGCTGATTACCAAATAACAAGAAATGATTTAAACAATATTAAACCTAAACCGCAGAATAAAAAGGTCGATGAAACTACACAACCTTTATTTCCTTGTGAAGAGAAAAACTGCACTGCTTGCTTTACTGCAGAAAATGATTTAAAACGCCACGTAAAAACTCATCGCTGTATCAACTATTGTGATCCTTGCAATCAAAGATTTTCGAGTGCAAGCACATTACAAAGGCATATCAAAAGCAAACATGTAAAAGGAAAGAAATCACATTTATGTAACGAATGTGGCAAAGAATTTGGAAGgtcggATGACTTAAAACGTCATCTTCTAACTCACACTGGGGAGAGACCATTTAGCTGCAAGACGTGCGGAAAGGCCTTTGCACAGTCATTCAGATTACTGGAGCATATGAGGGCACATTCCAACGAGAGAAATTTTATTTGTGCCATCTGTGGCAAGGCCTTTAAGAGATATACGAGTTTATTAGCGCATACTAAAACTCACAGCGGCATTAAAACTCACGAGTGTAAGGAGTGTGGCAAAAAATTATGTGGCGCTGGTTCTTTGGCACAGCATTTGAGAACTCATACAGGGGAAAGAAATTACATTTGTAATTACTGTGGAAAAGCTTTTGCCTGTCCTAGTAATTTAATCACGCACAAAAGAACTCACACAGGGGAAAGGCCCTATGGTTGCAATACATGCGGCAAGAGATTTCCTGACAAATCAAGATTATATGTTCACAATCGTATTCATAGTGGAGAGAGACCGTACGTCTGTTCATACTGTAACAAAGGTTGCATCAGTTCATCTTCCCTTAAGAAGCACATTAGAATCCACACTGGCGAGAAGCCATACGGGTGCAAAATGTGCGACAAACGTTTCACCAGAAGTGACGATCTGAATGTTCATATTAAAATTCACAAAGgagAGAGAAATTATGTCTGTGAGGTATGTCAAAAAGGTTTCTACCAAGCCAATAGTCTAAAGGTGCATATGAGGATTCATACAGGAGAGAAGCCGTACCATTGTAACTTGTGcaataagtctttttcacaatcGTCGTCTTATTCAGCTCACATGAAATCACATGGCTTGGAAAAGATTATGATATCTCCTCAAAAAACTGAGGTGATTGAAAATGAAGAaatggtaaaatatttataa
Protein Sequence: MAYEAMDFDKICRTCLSESTDLKDLFSENFITEENLTLSKLLSSCTSLEVCESDGFPKQVCMQCIHYILSFFTFQQQCHRSDSTLRALISGASSTQYIELKPVDNMIDSPVRIHEILSNSPLQIETLEDTLNDQEIVDNFSSDVDNLNDDPENVHIEKRTADSVLSENTDANNPNKLEDKEFEVKLGSTNEKIFDININEIDIQERELKADYQITRNDLNNIKPKPQNKKVDETTQPLFPCEEKNCTACFTAENDLKRHVKTHRCINYCDPCNQRFSSASTLQRHIKSKHVKGKKSHLCNECGKEFGRSDDLKRHLLTHTGERPFSCKTCGKAFAQSFRLLEHMRAHSNERNFICAICGKAFKRYTSLLAHTKTHSGIKTHECKECGKKLCGAGSLAQHLRTHTGERNYICNYCGKAFACPSNLITHKRTHTGERPYGCNTCGKRFPDKSRLYVHNRIHSGERPYVCSYCNKGCISSSSLKKHIRIHTGEKPYGCKMCDKRFTRSDDLNVHIKIHKGERNYVCEVCQKGFYQANSLKVHMRIHTGEKPYHCNLCNKSFSQSSSYSAHMKSHGLEKIMISPQKTEVIENEEMVKYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -