Bpel029910.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:11925628-11942413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.028 2.5 10.1 0.1 1 23 25 48 25 48 0.95 2 22 0.00023 0.021 16.6 1.0 1 23 51 73 51 73 0.97 3 22 0.0006 0.054 15.3 1.7 2 21 98 117 97 118 0.94 4 22 0.97 87 5.2 0.0 2 21 191 210 190 211 0.88 5 22 0.092 8.2 8.4 0.1 1 23 248 271 248 271 0.94 6 22 0.023 2.1 10.3 0.4 1 23 274 296 274 296 0.91 7 22 0.00013 0.012 17.4 3.1 1 23 339 362 339 362 0.97 8 22 2.5e-05 0.0023 19.6 1.3 1 23 391 414 391 414 0.94 9 22 0.00014 0.013 17.3 0.7 1 23 420 442 420 442 0.98 10 22 3.9e-06 0.00035 22.2 1.1 1 23 448 470 448 470 0.98 11 22 0.26 23 7.0 0.9 2 20 540 558 539 560 0.93 12 22 0.0006 0.054 15.3 2.6 1 23 585 607 585 607 0.99 13 22 0.022 2 10.4 0.1 1 23 630 652 630 652 0.98 14 22 0.047 4.2 9.3 0.4 2 19 657 674 656 678 0.91 15 22 5.1 4.6e+02 2.9 0.4 3 23 686 709 684 709 0.71 16 22 0.0013 0.11 14.3 4.4 1 23 715 737 715 737 0.97 17 22 0.0035 0.32 12.9 1.6 1 23 743 766 743 766 0.93 18 22 0.04 3.6 9.6 0.1 2 21 778 797 778 798 0.93 19 22 0.00011 0.0096 17.6 0.4 1 23 814 836 814 836 0.95 20 22 1.1e-05 0.001 20.7 0.3 1 23 842 864 842 864 0.98 21 22 0.0003 0.027 16.3 2.5 1 23 870 892 870 892 0.99 22 22 0.00079 0.071 14.9 0.8 1 21 898 918 898 919 0.95
Sequence Information
- Coding Sequence
- ATGGCAGTatcaagtaagaaaaaacctgaGATGAACGTCGACCCGTATCATTTCGACAGATTTAAGAACGTCTATATCTGCAACCGTTGTGTTAAGGAATTTAACGTGAAATCAAGCATTGAAGAGCACATAGAGAATGATCATCCCGGTTTTAAATGCAGTACTTGTTCTAAGACCTTCGAGTCCACCGATGACTTGGAATATCACCGCGCCATCCACACCGCCAAAGAAatttcgttcgggggTGTCAAGAAGTTGACTCCAGAAACGACAATATCCGGTATATCTTGGCAATGTTGTCATTGTAACCAGAAATTCGCCAACCTCAGCAAACTGAAAGCACATATGGAAATTGATTGCCCCGTAAAAAGTAATCCGCAAAAACGGAAACTGAGACCCAACAAGAAGTCGCTAGCAACAGCGAAATCCCTCTTAAGTAAACTGCCGAACATCAGAACGAAAATAATCAGAACAAAAAAAGATGCGAAAGCGACCAAGAATACTAAATCGATGAGACAGAAAggatataaatcaaaatttgcagGTAACTCGGAGAAGAGATGCTTTTGGCCGTGTTCGCAATGCCCTCAGATATTCTCCTCCGAAGTAAGACTCGGCGAACATCTTTTAAAATGCAGTAGAAATATCGCAGAGGTATTTATTAAACCGAGGAAGAAAAAACCTGAGGCGAAAGCGCCCTCTCCTTTCGATCCGTATCATTTCGACAGATTTAAGAACGTCTATATCTGCAACCGTTGTCTTAAGGAATTTAACGTAAAGTCTGGCATTGAAGAGCACATAGAGAATGATCATCCCGGTTTTAAATGCAATACTTGTTCTAAGACCTTCGAGTCCATCGTCGACTTGGGATATCACAGCGCCATCCACAGCGACACTAAAGAAATGACGTGCTCTTTCTGTGAATTTAAAAGCGCAGTCAAGTCCAAAATGGCATTCCACATTCAAACGGAACACGTCGACAGCTCGGACTTAATCAACGTTCAAGATGTCAGCTTTACTTGCGTAGTCTGCGGCAAAGCGTTCTACAATCGCCGGAAGCTGTGGCACCATCAAAAGAACTATCACAAAGCGACGGTTGAAATTTTACCGTCTATGGGTGCCCGCTTGGACGGACCTGTGACGAAAGCGGCATCAGCCGCACCAAAAGTATACCTTTGTGATACTTGTGGCAAAAACTTCAACTCCAAGTATCGCTTGGAGCGTCACCAACGTGCTATGCACCAAGGGCTAAAGCCGTACATCTGCCGGTTCTGTGGCAGAGCTTTCACCGGAAAGGATACTATGCAGAAGCACGAGCGTATTCATACTGGCGAGAAACCTTACTCGTGCGAGTACTGTGGCAAGTGCTTCAGGCAACCAGGGCCGTTCTCGGTACATTTAAGAATTCATACCGGCGAGAGGCCGAATAAAAAACCAGTTTTAAGAATAAGAATAACTAGATCTAGTAACacaaaaaaagaatttaaagaaGAAAGCGAAGACGAAGTTGATCTCTTGTCTagaattaaatttaagaaaattccaAACGACTTGGTAGACGATGACGACGTGACGAGGAAAAAGAAGAAGACACGAATGTTCGGCGTTAAGTCTTGGAGGTGCGAACGTTGTCAAGAAGTTTTTTATGATACGAAGCTATGGCAACGGCACAAACACCAGAAGGATTGCACTTTCGAACCTTTGAAAGGCAAGTGGACGGGTCCACCTAAAAGACCATACAAGGCACGTGTATACACGTGTAAGTATTGCGACGATGACTTCAAAACCTTGAAATTACTGAAGATTCATAGGAAAACTCATAAGCCTGACATAGAGGAACCACAGGAAGAAGTGCCAACTTACAAATTTGATAATCTCCAAGACCTTTACATATGTAGTGTATGTTCGGCGGAGTTCCAAGACGAATCCGAAGCAAAGGAgcatataaaaaaacaccaagaaGTAATAACTTGTCAAGAATGCAAAGAAACATTTAAGAGCTATTATGATCTTGGAATGCACTCTCCGTCTCATGATCCAGAACACAAGGTCCACTGTCCATTGTGTTCATATGTATCTTCCACTGCAAACAGCTATAGTTTTAAGGCACATATAAATTACGTACACTTAAAAAAGTTTCCATTTTATTGTAAGGATTGTGACAAAGGATTTAAGCAGTATAAGACCTACCACGAACACCAAAATGCTCATTCGGGACAGAAACCCTACGTCTGTATAGTTTGTCAGAAGGGTTTCACCCATCAGAAGTACTTGCAAGTTCACCAAGTGAGAAatcatcagGTTGGAACCACCGGCaacaaaatcgaaaacgaatgcCGCACTTGCAACCGATACTTTTACAAACCGGAAGCGCTAAAAGAACACATCGAAGTATGTTACAAAAAGAAAAAAGTCAAAAGTGCTACGCCGGCCAAAGCTTTCCTTTGTGATACTTGCGGGCAGACGTTTACTGAGAAGGCCAAGTTGCTGGAACATCTCAGAGTTCACAGGGGCGACCTGCCTTTTGTTTGTACGTGGTGCGGTAAAAGATTCCCCGTTAAGGCTTACTTAAGGACTCACGAGAGAGTTCATACGGGAGAGAAGCCTTATTCGTGCGAGTTTTGTGGGAAGAGATTTGGGCAGCATGCACCTTTTAGGGTACACAGACGGACGCACACAGGTGAACGACCATATGTGTGTGATTTTTGCAACAAAGGCTTTACCACGAACCAAGGCCTGAAGCTACATAAGAAAAATTGTCCCGACAATCAAGTCATAAAAATGCTAAACTCGAATCCGTCGATTTCCGATGCAGCTCCTGCTTTACCCGCGCCTAAATCGGAACATCTTGCGCCAAAGGCGGAAGACCAGCcagtttttggatatttttga
- Protein Sequence
- MAVSSKKKPEMNVDPYHFDRFKNVYICNRCVKEFNVKSSIEEHIENDHPGFKCSTCSKTFESTDDLEYHRAIHTAKEISFGGVKKLTPETTISGISWQCCHCNQKFANLSKLKAHMEIDCPVKSNPQKRKLRPNKKSLATAKSLLSKLPNIRTKIIRTKKDAKATKNTKSMRQKGYKSKFAGNSEKRCFWPCSQCPQIFSSEVRLGEHLLKCSRNIAEVFIKPRKKKPEAKAPSPFDPYHFDRFKNVYICNRCLKEFNVKSGIEEHIENDHPGFKCNTCSKTFESIVDLGYHSAIHSDTKEMTCSFCEFKSAVKSKMAFHIQTEHVDSSDLINVQDVSFTCVVCGKAFYNRRKLWHHQKNYHKATVEILPSMGARLDGPVTKAASAAPKVYLCDTCGKNFNSKYRLERHQRAMHQGLKPYICRFCGRAFTGKDTMQKHERIHTGEKPYSCEYCGKCFRQPGPFSVHLRIHTGERPNKKPVLRIRITRSSNTKKEFKEESEDEVDLLSRIKFKKIPNDLVDDDDVTRKKKKTRMFGVKSWRCERCQEVFYDTKLWQRHKHQKDCTFEPLKGKWTGPPKRPYKARVYTCKYCDDDFKTLKLLKIHRKTHKPDIEEPQEEVPTYKFDNLQDLYICSVCSAEFQDESEAKEHIKKHQEVITCQECKETFKSYYDLGMHSPSHDPEHKVHCPLCSYVSSTANSYSFKAHINYVHLKKFPFYCKDCDKGFKQYKTYHEHQNAHSGQKPYVCIVCQKGFTHQKYLQVHQVRNHQVGTTGNKIENECRTCNRYFYKPEALKEHIEVCYKKKKVKSATPAKAFLCDTCGQTFTEKAKLLEHLRVHRGDLPFVCTWCGKRFPVKAYLRTHERVHTGEKPYSCEFCGKRFGQHAPFRVHRRTHTGERPYVCDFCNKGFTTNQGLKLHKKNCPDNQVIKMLNSNPSISDAAPALPAPKSEHLAPKAEDQPVFGYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -