Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: salm_1
Assembly: GCA_963991005.1
Location: OZ022562.1:12304816-12307240[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00053 0.047 15.5 1.4 2 19 5 22 5 27 0.89

2 17 4.5e-06 0.00041 22.0 0.2 2 23 33 55 32 55 0.95

3 17 0.0079 0.7 11.8 0.6 3 23 63 84 61 84 0.96

4 17 0.0026 0.23 13.3 3.2 1 21 91 113 91 116 0.87

5 17 0.0073 0.65 11.9 1.9 1 20 123 142 123 145 0.90

6 17 7.7e-07 6.9e-05 24.4 0.6 1 23 149 171 149 171 0.99

7 17 7.3e-07 6.6e-05 24.5 0.7 1 23 177 199 177 199 0.97

8 17 5.4 4.8e+02 2.9 0.0 1 21 217 237 217 238 0.93

9 17 3e-06 0.00027 22.5 0.6 1 23 267 290 267 290 0.95

10 17 0.00044 0.039 15.7 0.8 2 23 297 319 296 319 0.90

11 17 0.00042 0.038 15.8 0.1 2 23 327 349 326 349 0.90

12 17 0.0053 0.47 12.3 0.9 2 23 356 378 355 378 0.96

13 17 0.00093 0.083 14.7 0.5 3 23 387 410 385 410 0.89

14 17 3.8e-05 0.0034 19.1 2.4 1 23 417 439 417 439 0.95

15 17 2.9e-05 0.0026 19.5 0.9 1 23 446 468 446 468 0.99

16 17 2.3e-05 0.0021 19.7 0.8 1 23 474 496 474 496 0.96

17 17 0.00012 0.011 17.5 4.1 1 23 502 525 502 525 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00053	0.047	15.5	1.4	2	19	5	22	5	27	0.89
2	17	4.5e-06	0.00041	22.0	0.2	2	23	33	55	32	55	0.95
3	17	0.0079	0.7	11.8	0.6	3	23	63	84	61	84	0.96
4	17	0.0026	0.23	13.3	3.2	1	21	91	113	91	116	0.87
5	17	0.0073	0.65	11.9	1.9	1	20	123	142	123	145	0.90
6	17	7.7e-07	6.9e-05	24.4	0.6	1	23	149	171	149	171	0.99
7	17	7.3e-07	6.6e-05	24.5	0.7	1	23	177	199	177	199	0.97
8	17	5.4	4.8e+02	2.9	0.0	1	21	217	237	217	238	0.93
9	17	3e-06	0.00027	22.5	0.6	1	23	267	290	267	290	0.95
10	17	0.00044	0.039	15.7	0.8	2	23	297	319	296	319	0.90
11	17	0.00042	0.038	15.8	0.1	2	23	327	349	326	349	0.90
12	17	0.0053	0.47	12.3	0.9	2	23	356	378	355	378	0.96
13	17	0.00093	0.083	14.7	0.5	3	23	387	410	385	410	0.89
14	17	3.8e-05	0.0034	19.1	2.4	1	23	417	439	417	439	0.95
15	17	2.9e-05	0.0026	19.5	0.9	1	23	446	468	446	468	0.99
16	17	2.3e-05	0.0021	19.7	0.8	1	23	474	496	474	496	0.96
17	17	0.00012	0.011	17.5	4.1	1	23	502	525	502	525	0.97

Sequence Information

Coding Sequence: ATGAGATCGGCTTCTTGCACTGATTGTGGAAAAACTTTTGCAAGAGGATGGAACTTAAAACAACACTGTATCTCAGTTCACGAAGGTATTATGGTCAGATGTGAGATTTGTGGTACAAATTTTAAGGACAAAGGTGGTCTACGAAAGCACATAAAGCTTAttcattttaaagaatttaataTGAATTGTGATATCTGCAATAAAGGGTTTCTTTATACCAGCCAATTAGAGCAACATAAAAAAATGGTTCATGAAGGGCAAGTAATCATGCATGCCTGCAAACAGGAAGGGTGCAAAAAAACGTTTAGATCCAGAAGTGGTTTGAAACACCATTTTGATGCCGAGCATATTATCGAGAAACCTGAATTTTTGTGTGGACAATGTGGAAAGACTTATGACCATTTTCCTAACTTTCAGAAGCACATTTGGCGTCACAATAGCCCATACAAGTGTAGTATTTGTGAAAAAACTCTGACGAGTAAAGGGAATTTACAAAGTCATATGCTTATTCACACAGGAGAAAAACCGTTCATTTGTGAGCTATGCGGTCGCAGTTTTAACAAACAGTATAATCTCAAAACTCACATGGTCGTTCATACTAAGGACAAACATTTTGGCATGCTTACACAAGATGAAACCTTTGTAACATACAAATGTGTTCAGTGTGCTGTAGTGGTTGACACGTACGAAAAATTAGTGGTTCATGAGAGGTACTGcggtgaaaataataaaatggcaGGATACCCTAAAAAAGAAAATCTCGTGATCAAAAAAGAGAGCGACAAAAAGCATACAGGCTTTCCCTGTCCGGAATGTGGAAAATCATATgccaaaaaaagttatttgaattCGCATAAAAATTATGTTCACAAAAGAACTCTGATGACTTCTTGTACAGAATGCGGGAAATCATTTACAAATAAATGGATCCTTAATAAACATTTCGATTCAGTTCACCGAGGAATCGTTAAATATTCGGAATGCGATATTTGCGGTGAAAAGTTTACGCAAAGAAATGGTTTGCTACAACACAGGGACgccatccatttaaaaaaatttaatatgtattGTGATATATGCAATAAAGGATTTCTTTATGTAAGTCAGTTAAATAAACACAAGAAGAAGGTTCATGATCGTGATATCGAAATTATTGCTTGTACACAGGAAGGATGTAAAAAAACTTTCAGGTCAACTAGCAGTTTGAAATACCACCTAAGTGCCGATCATACAACTGATAAACCCCATTTTTTGTGTGGCCAATGTGGAAAGACATTTGATCACCCAGGTTTGTTCAAGAAACACCTTCGGTTTCACAAGAACCAGCATTTTCTATATAAATGTAATCTTTGCGAGAAAACTGTCACGTCCAAGGCTAGTTTCGACTCGCACATGCGTATTCACACAGGAGAAAAACCATTCGTGTGCGAGCATTGCGGATTGGGTTTTAAACAACGAGGTAGTTTAAGAAGTCACAGGGTCGTTCACACCAAAGAAAAACCATTCACTTGTAAATTTTGTGATAAAAAATATACTCAGCAAGGTCCTCTAACTCAACACATTCGACAGTGTCACCCAGATGTTGTGAAGAAAGCTGGAAATCAGATAGTTAATGTCTTGGATGAAAAGAAAATGCGTGATGCTTCGAAAGAGGACGGTGAACTTGACAGTGAGAAGTTAACGTCTCCATAG
Protein Sequence: MRSASCTDCGKTFARGWNLKQHCISVHEGIMVRCEICGTNFKDKGGLRKHIKLIHFKEFNMNCDICNKGFLYTSQLEQHKKMVHEGQVIMHACKQEGCKKTFRSRSGLKHHFDAEHIIEKPEFLCGQCGKTYDHFPNFQKHIWRHNSPYKCSICEKTLTSKGNLQSHMLIHTGEKPFICELCGRSFNKQYNLKTHMVVHTKDKHFGMLTQDETFVTYKCVQCAVVVDTYEKLVVHERYCGENNKMAGYPKKENLVIKKESDKKHTGFPCPECGKSYAKKSYLNSHKNYVHKRTLMTSCTECGKSFTNKWILNKHFDSVHRGIVKYSECDICGEKFTQRNGLLQHRDAIHLKKFNMYCDICNKGFLYVSQLNKHKKKVHDRDIEIIACTQEGCKKTFRSTSSLKYHLSADHTTDKPHFLCGQCGKTFDHPGLFKKHLRFHKNQHFLYKCNLCEKTVTSKASFDSHMRIHTGEKPFVCEHCGLGFKQRGSLRSHRVVHTKEKPFTCKFCDKKYTQQGPLTQHIRQCHPDVVKKAGNQIVNVLDEKKMRDASKEDGELDSEKLTSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -