Bpel029909.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- Sall1
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:11907121-11922710[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 7.5 6.7e+02 2.4 0.2 2 19 18 35 17 37 0.88 2 34 0.0054 0.48 12.3 3.5 3 23 66 86 65 86 0.97 3 34 0.31 27 6.8 0.0 1 23 107 129 107 129 0.97 4 34 0.97 87 5.2 0.1 2 23 134 155 133 155 0.95 5 34 8.1 7.3e+02 2.3 0.4 2 23 160 184 159 184 0.79 6 34 3.1e-05 0.0028 19.4 3.0 1 23 190 212 190 212 0.98 7 34 0.0045 0.4 12.5 2.9 1 23 218 241 218 241 0.95 8 34 0.012 1.1 11.2 0.9 2 20 253 271 252 273 0.95 9 34 9.9e-05 0.0088 17.8 0.2 1 23 287 309 287 309 0.95 10 34 3.1e-06 0.00028 22.5 0.8 1 23 315 337 315 337 0.97 11 34 0.00057 0.051 15.4 2.0 1 23 343 365 343 365 0.99 12 34 0.0015 0.14 14.0 1.3 1 21 434 454 434 455 0.95 13 34 0.0066 0.59 12.0 4.3 1 23 505 527 505 527 0.97 14 34 0.003 0.27 13.1 0.3 1 23 547 569 547 569 0.97 15 34 0.19 17 7.4 0.5 3 23 575 596 573 596 0.97 16 34 0.097 8.7 8.3 0.2 1 23 602 626 602 626 0.95 17 34 0.081 7.3 8.6 4.2 1 23 632 654 632 654 0.89 18 34 0.012 1.1 11.2 0.4 2 23 661 683 660 683 0.91 19 34 0.18 16 7.5 0.4 2 23 695 717 694 717 0.95 20 34 0.0028 0.25 13.2 0.5 3 23 730 750 728 750 0.96 21 34 0.14 12 7.9 4.2 1 23 756 778 756 778 0.91 22 34 2.8e-06 0.00025 22.6 0.5 1 23 784 806 784 806 0.99 23 34 0.0014 0.12 14.2 0.2 1 21 812 832 812 833 0.95 24 34 0.00043 0.039 15.8 0.6 2 23 942 963 941 963 0.97 25 34 0.59 53 5.9 0.1 1 22 983 1004 983 1006 0.90 26 34 0.0088 0.79 11.6 2.6 1 23 1010 1032 1010 1033 0.93 27 34 0.2 18 7.4 0.0 3 23 1040 1061 1038 1061 0.95 28 34 0.018 1.7 10.6 2.5 1 23 1067 1089 1067 1089 0.95 29 34 0.0029 0.26 13.1 2.9 1 23 1095 1118 1095 1118 0.94 30 34 0.0011 0.099 14.5 0.5 2 23 1130 1152 1129 1152 0.93 31 34 0.00021 0.019 16.7 0.5 3 23 1164 1184 1162 1184 0.95 32 34 0.00022 0.019 16.7 3.1 1 23 1190 1212 1190 1212 0.97 33 34 8.2e-06 0.00073 21.2 0.7 1 23 1218 1240 1218 1240 0.98 34 34 0.031 2.7 9.9 0.8 1 20 1246 1265 1246 1266 0.95
Sequence Information
- Coding Sequence
- ATGAAGAAAATGGACGATaataaaaaaacgaaaaacGGCACCAAGACCTGGCGTTGCGACGTATGCCAAACGGCGTTCCTTAAAAAGAAACTCTACGAACAACACAAGGCCGGTAGCTTCTGTCTTTTTGTACCGAAAGCGAAAATTAAAACGGAAAAGTCCCCGAAAACACCACGCACGGAAAATGTACGCCACTGCAAGTACTGTAGCGAATCGTTCGCCAACCTGAAGCTTCTGAGGGATCATAAGAAATCTCACAAGGTGGAGGATATCCGTGAAGAAGATCCGTCGTTTAAATTTGACGAGCTACAGGACCTTTATATCTGCGAGGTGTGCTCGGCTGAATTCCAGAAGCCAGATGAGGCGGAGGACCATGTGAAAAGTCACATAACAGGTCTGAAATGTAGCGTCTGTGAGGAATGGTTCCGAACACCGTTCGAATTAGGAATGCACTCGATGATTCACGATAAGTCCATTAAGTGCCCGCTTTGCACCTACGTTAACAAAAGTGCTAATCAATACAGTTTCAAGGCTCACCTGAACTACATGCACTTAAAAAGGTTCCCTTTTTACTGCAAGGAATGCGGCAAAGGCTTCAAGCAGTACAAGACCTATAACGAGCACCAAAACACCCATACCGGTGTCAGACCCTACGTGTGCATGGTATGCGAGAAGACCTTCACGTTCCAAAAATGTTTAGTGACACATCAAGTTCGAAGCCATCAAGTGTCCACCACGGGGAACAGAATGGAAAATCAGTGCCGCAGATGCCATAGGAACTTCAAGAACCCGGAGTCTATGCAAGAACACATGGACGAGTGTTACAAGAAAcgaaaaaatacgaaaaaaccTAACTCGTTCCTATGCGACACTTGCGGCCAAGGGTTTATCGAAAAAGCGAAACTCCAGAAACATATAAGGGTGCACTTGGGCGATCTACCGTTCGCTTGCAAATGGTGCGGTAAAAAATTCCCCCAAAAGGATTATCTTAAAACGCACGAGCGGGTGCACACCGGCGAGAAACCCTACTCCTGCGAGTTTTGCGGCAAACGTTTCGGTTTTCACGCCCCCTTCCGGGTGCACATCAGGACGCACACGGGCGAGCGGCCGAATAATccaccaataaagattaaactgCGCACTAATCCAAGACGAGCCAGCACCAAAAGACTAAAGGACTTTCTTGATATCGTTAAGCATTCAATTAGCGATGACGATGAGAATTCCGACTCAAAAGGAGAGATGTCGAGTCCTAGCAAGAAATATCCTCGAAGCAGAACGAAAAGCAAAAACCAACAGTACGAATGCAAAAAGTGTGCGAAAATctttaccactaaaatccaACTTGATAGGCACAAGAAAAAGGACGATTGTGAGTTTGTTCTGCCACTCCTAGAAGAAGAAACGCCTACcaaaaagaaaatgaaaatagaaTACAAAAGTCTCAAACACGAGAAAATAAAATCAGAATATAAAACAATCATCAGCACGACGGAGGACGGCGAGAAGCTATACCACTGCAAAAAATGCCCCCTGAAATTTAGCATGCTTAAGGATCTTAAACAGCATCGGAAAGAGCATGTTCCAAAggaatttatcgaaaaccacacGTTTTATTTTGACGACGCCCAGGAGCTTTATATTTGCAATACCTGCTCTGCTGAATTTAAAGACAAAGAGGAGGTGGAGAGACATACCAAAGCTCACGGAGAGAATTTCGGATGTTCGTTGTGCGAGGAGAAATTTCAAACTTTGTTCCAGCTTGGAAGTCATTTGAAGGTTACTCATAGCGATGACGATCAATTCAGCTGTCCTCTATGCCCCGACCTGAAATTCCCAAAACCCTCCCTATTTATGAAGCACATCGACATGAAGCACCAAAAACGATACATGTACACTTGCAAAGAGTGCGGGAAAGGGTTCCACAGCAAAACTCTATGCAGAGAGCACGGCAATGTCCATCTGGGAGTCAAACCTTTCGCCTGCATAGTGTGTGGTACCAGTTTCACTTATTCCAAATCCGTCACTACACATCAATTGAAAGCCCATAGAGTGgaaattttaggtaaaaaccACGCGACGGAGTGCACTTTCTGCAGAAATAGATTCGTATCGATAGCGTCGTTGGACCGGCACATTCAACAAGTGCACTCTGCCCCAAAAGCTCCGAAAGAAAAGATCCACCTATGCGATATCTGCGGAATGGGGTTCGCcaagaaaaacaaaatggtggTCCACCAAAGAGTGCATACAGGCGTGAAACCTTACCCTTGTCGCCACTGTCCTAAAAGTTTCTCTAAATCGGGAGAGCGTAATTGTCACGAAAGAATTCATACCGGAGAACGACCTTACAGTTGCGAGTATTGTGGGAAGGCCTTTAGACAGACCGCACCGTTTAAAGTTCACATACGAACTCATACCGGGGAGAGGCCGTATGTATGTGATATTTGTGTTAAGGGTTTCACTACTAACCAGGGGTTGAAACTACATAGGAAAAATTGCGGAAATTTGGATCTTAAAGCATATCGGAGTAAGATAAGATTAAAAATACCAAAACCAGAGACCAAAAGGAGAAGTTCGAAATACTCAGATTCTGACTGTGATACCGACCACATTCCACTGATAAGACGAACCTTAAGGAGTAATACAACAGCTCCAGCGAATATAATAATAGATGTAAAAGAAGAAGAGGAGTTGGTCATTAATTATTCTCTGGATAGCGAGAGTGATTTCGAACCTCCTAAACCGAAAAGGACGCTAAAATTTAAAAGCAAAGCCCCTAAAACGAGAAAAAAACGCAGTTACAATTCATCCAAGACGTGGGAATGTAAGAAATGCCAGCAAGTATTTGTGACTTTAACTCTGTTACGAGATCACCGTAAAATACACAGCAAGCAAGATGTTCCAGAAAAACATACCTACAAATTCGACGTGATCCAAGACCTATACAtttgcaacacttgttctgcagaATTTCAAGATGAAACGGAGGTTAAGAATCACATAGTCGACCTTCACGACAAGGAATATAGTTGTAACCAGTGCGAGAAAAGTTTCAAGACGTTGTATGAAATGGGAACGCATTCTGGAACGCACCATCCCGAAGGACACGTGAACTGTCCTCTATGTAGCTACAAGAGTCCAAAAAAGGGGGCGCTTTTGATTCATATTAACTACGTGCATCTGAAAAAATTCGCTTACTTTTGCCAGAAATGCGGCAAAGGCTTCAATGACCACCTTCTATTTAAGGAGCACGAAAATGAACACTTGGGTGTGAGACCTTTTTGCTGTGTAGTCTGTGGGAAGAGTTTTACTTACACGAGatatttgtacACTCACCAAGTGCGAGCCCACAGAGTACCAATAGACGGGCAGCGACTACCCAACCAATGTGCCTATTGCAATAGAAAGTACAGCAAACCCGAGACTTTAGAAAAACATCTGGAAGAGACGCACTTTAAATCGGGACCCCACGAGAAAAAGCATCTTTGCGACACCTGCGGCAAAGGATTCGCCCAAAGAAGTAAACTGGTTATTCACGGAAGAGTTCATACGGGCTACAAACCGTACGCCTGTAGATATTGCGAGAAATGCTTTACCAAGAAAGATTATCTTGTCATGCACGAGAGAGTGCACAGCGGTGAAAAGCCGTACTCGTGCGAGTACTGCGGAAAGTGCTTTAGCCAAGGTGCCCCGCTTAGGATTCACTTGCGGATTCATACGGGAGAAAAGCCGTATcaatgtcagttttgtttaacGAGATTTACTTCTAGAGGAGCTTTAAATTTACATAAGAATTGCGTGGCGACAAATAACGAATCGTTTTAG
- Protein Sequence
- MKKMDDNKKTKNGTKTWRCDVCQTAFLKKKLYEQHKAGSFCLFVPKAKIKTEKSPKTPRTENVRHCKYCSESFANLKLLRDHKKSHKVEDIREEDPSFKFDELQDLYICEVCSAEFQKPDEAEDHVKSHITGLKCSVCEEWFRTPFELGMHSMIHDKSIKCPLCTYVNKSANQYSFKAHLNYMHLKRFPFYCKECGKGFKQYKTYNEHQNTHTGVRPYVCMVCEKTFTFQKCLVTHQVRSHQVSTTGNRMENQCRRCHRNFKNPESMQEHMDECYKKRKNTKKPNSFLCDTCGQGFIEKAKLQKHIRVHLGDLPFACKWCGKKFPQKDYLKTHERVHTGEKPYSCEFCGKRFGFHAPFRVHIRTHTGERPNNPPIKIKLRTNPRRASTKRLKDFLDIVKHSISDDDENSDSKGEMSSPSKKYPRSRTKSKNQQYECKKCAKIFTTKIQLDRHKKKDDCEFVLPLLEEETPTKKKMKIEYKSLKHEKIKSEYKTIISTTEDGEKLYHCKKCPLKFSMLKDLKQHRKEHVPKEFIENHTFYFDDAQELYICNTCSAEFKDKEEVERHTKAHGENFGCSLCEEKFQTLFQLGSHLKVTHSDDDQFSCPLCPDLKFPKPSLFMKHIDMKHQKRYMYTCKECGKGFHSKTLCREHGNVHLGVKPFACIVCGTSFTYSKSVTTHQLKAHRVEILGKNHATECTFCRNRFVSIASLDRHIQQVHSAPKAPKEKIHLCDICGMGFAKKNKMVVHQRVHTGVKPYPCRHCPKSFSKSGERNCHERIHTGERPYSCEYCGKAFRQTAPFKVHIRTHTGERPYVCDICVKGFTTNQGLKLHRKNCGNLDLKAYRSKIRLKIPKPETKRRSSKYSDSDCDTDHIPLIRRTLRSNTTAPANIIIDVKEEEELVINYSLDSESDFEPPKPKRTLKFKSKAPKTRKKRSYNSSKTWECKKCQQVFVTLTLLRDHRKIHSKQDVPEKHTYKFDVIQDLYICNTCSAEFQDETEVKNHIVDLHDKEYSCNQCEKSFKTLYEMGTHSGTHHPEGHVNCPLCSYKSPKKGALLIHINYVHLKKFAYFCQKCGKGFNDHLLFKEHENEHLGVRPFCCVVCGKSFTYTRYLYTHQVRAHRVPIDGQRLPNQCAYCNRKYSKPETLEKHLEETHFKSGPHEKKHLCDTCGKGFAQRSKLVIHGRVHTGYKPYACRYCEKCFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRIHTGEKPYQCQFCLTRFTSRGALNLHKNCVATNNESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -