Bpel029973.3
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- ZEB2
- Assembly
- GCA_963991005.1
- Location
- OZ022562.1:12310002-12316564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 7.6e-06 0.00068 21.3 0.4 1 23 38 61 38 61 0.97 2 35 0.00011 0.0099 17.6 0.1 2 23 68 90 67 90 0.93 3 35 0.006 0.53 12.2 2.4 1 23 97 120 97 120 0.89 4 35 0.0042 0.38 12.6 0.7 1 23 126 149 126 149 0.91 5 35 0.0019 0.17 13.7 0.0 2 23 157 181 156 181 0.93 6 35 0.0092 0.83 11.6 3.5 3 23 190 210 189 210 0.97 7 35 0.00013 0.011 17.4 0.6 1 23 217 239 217 239 0.99 8 35 0.00089 0.08 14.8 0.4 1 23 245 267 245 267 0.96 9 35 1.6 1.4e+02 4.5 0.7 1 21 291 311 291 312 0.92 10 35 5.4e-06 0.00048 21.7 0.7 1 23 340 363 340 363 0.94 11 35 3.1e-05 0.0027 19.4 2.3 2 23 370 392 369 392 0.96 12 35 0.0017 0.15 13.9 0.9 1 23 399 422 399 422 0.98 13 35 0.0074 0.67 11.9 1.2 3 23 430 451 429 451 0.95 14 35 0.0023 0.21 13.4 0.1 3 23 460 483 458 483 0.89 15 35 7.4e-05 0.0066 18.2 2.8 1 23 490 512 490 512 0.95 16 35 7.6e-05 0.0068 18.1 0.2 1 23 519 541 519 541 0.99 17 35 3.3e-05 0.003 19.3 1.2 1 23 547 569 547 569 0.97 18 35 2.1 1.9e+02 4.1 1.4 1 11 575 585 575 587 0.92 19 35 4e-05 0.0036 19.0 0.1 2 23 640 662 639 662 0.95 20 35 0.0002 0.018 16.8 0.2 2 23 669 691 668 691 0.94 21 35 0.00018 0.016 17.0 0.3 1 23 698 721 698 721 0.97 22 35 0.024 2.2 10.3 3.5 3 23 729 750 727 750 0.93 23 35 0.0058 0.52 12.2 0.9 3 23 759 782 757 782 0.90 24 35 1.7e-05 0.0015 20.2 1.8 1 23 789 811 789 811 0.97 25 35 5.1e-07 4.6e-05 25.0 1.6 1 23 818 840 818 840 0.99 26 35 5.4e-05 0.0049 18.6 0.2 1 23 846 868 846 868 0.97 27 35 7.8e-06 0.00069 21.2 0.9 1 23 943 966 943 966 0.97 28 35 0.021 1.9 10.4 1.0 2 23 973 995 972 995 0.93 29 35 0.0001 0.0093 17.7 0.2 2 23 1003 1025 1002 1025 0.96 30 35 0.045 4 9.4 0.7 3 23 1033 1054 1032 1054 0.96 31 35 0.0044 0.39 12.6 0.2 3 23 1063 1086 1061 1086 0.88 32 35 3.5e-05 0.0031 19.2 5.3 1 23 1093 1115 1093 1115 0.98 33 35 5.4e-05 0.0049 18.6 0.6 1 23 1122 1144 1122 1144 0.99 34 35 1.2e-05 0.001 20.7 0.2 1 23 1150 1172 1150 1172 0.98 35 35 0.00047 0.042 15.6 3.3 1 23 1178 1200 1178 1201 0.95
Sequence Information
- Coding Sequence
- ATGAATGATTTAATAATAGTTCCTCGTAAAACGAGCACACCCCAAATTAATATCGAATCTAAATCCGCCAAAGATAAACAACCAATTGTAAAAGttgagaaaaaagaaaaatttcctTGTCCTGAATGcggaaaattatttgcaaaaagAAAACATCTTAACGCACATGTAAATACGGTTCATAAGCGTGCAAAAGCAACTCCTTGTACGGAATGCGGCAAGGTGTTTGTAACCAAGGGATCTTGGAAGAACCACGTCGATATAATTCATCGaggaattattaataattttccatgTGAGACCTGTGGTGAAAACTTTACATCCAAAAGCTCCTTGAAATTCCACAGAATTCATACTCAcgttcaaaaatttaaatttcattgtGATATTTGTAATAAAGGATTTATTTATGACAGTGCATTAAAGCAGCATAATACGGTAGCACATGGAGATGGGGTTCCTACCCTGCCTTGTCCCGAGGAAGGATGTACGAAGGCGTTTGTAACCACTGGTGGTTTAAAATACCACATGCGAGCCGAACATACTGAAGACAAACCCGAACTCCTTTGTGCACACTGTGGAAAAACTTTTGATCACCCTACTGTATATAGTAAGCACCTTAGATTTCATAAAATTGGTCGTCCCGAATACAAATGCAgcatttgtcagaaaatgattAAATCTAGAAATGGTTTACAAGGTCACATGCGTATTCATACAGGGGAAAAGCCTTTTATTTGTGAGCAGTGTGGAACGggttttagaacaagaactatCCTTAAAAAGCATATGGTGGTTCATACTAAAGAGAAACCGTATGCATGCAAATTGTGTGATAAAAGCAAAAGTCAATCCTCCACGTCAAAAATATTCAACTGTGATAACTGCAATCTGGGTTTTCAAACTCGTTGGAAATTTGGTATTCAcaaaagaaagtgttgtgaagtCGGCAAGAAAAGTGAATGCCCTAAAGAGAAAACTTCCGTTTTAGAAAAGGAGAACGAAGGAATTAAAACTTTTTCTTGTCCCGAATGTGGCAAGGTATTTGCTAAGAAAAATTACCTGAACAAACACGTCAATTTTCTCCATAAGCGAACACAAATGACATCCTGTACCGAATGTGGGAAAATCTTTACAAAAAAGTGGTGTCTAAAAAAACACATCGAAACAATTCATCGAGGTATTATCAACTATTTCAAATGCGATATATGCGGTGAAAATTATACCAGCaaatttattttgcaaaatcacAAGAATACTGTTCATCTGAAGAATTTTAATGTATTCTGTGACATTTGTAATAAAGGATTTATTTATGACAGTGGTTTAAAACATCATAAGAAACTGGCACATTGTGACGAAGTTATCATCATTGCTTGCACGCAAGAAGGttgtagaaaaacttttaaaacaccGGGAAGTTTGAAATATCATATAGATGCGGAGCATACTCCAGACAAGCCGGTGTTTCTGTGTGGAGAgtgcggaaaaatttttaatcaccCATTTAACTATAAGAAGCACCTTCGATTTCATAAAAAAGGGCGTCCTCTTTACACGTGCAAGCTATGTGACAAGGTTTTAGCATCCAGAACCAGTTTGGACGCGCATATTCGTATTCATACCGGAGAAAGACCGTTTGTGTGCGAGCAGTGTGGTCTATGCTTCACTAGAAAGAATCTTCTGAAAGGCCATATGGTTGTTCATACCAAAGAGAAACCCTACGCCTGCAAATTTTGTGATAAAAAatttaaacTGGAACCAGTCATAGTGACATATCAATGTATTCAGTGTGCTGATGTTCTAGAATCGAATGAAGAATTATATACacatgaaaaaatatgttttattcaaaaatacaaGAAACGTCAAAAGAAAAACCCCATCAAGAAAAGAAATGAAATAGAACCACGATCCGTATGTCAGGAATGTGGGAAATCATATGCCACGCCAAGGTTATTGACGGAGCATATAAAATACATTCATAAGCGAGGGGAAATGTCTTATTGTGAAGAATGTGGAAAAACTTTTACGAGAAAATGGATTCTTAAGCAACACATTGACGTGGTCCATGAAGGAAATGCTAAACACTTTACTTGTGAAATTTGTGGCAAAACCGTTAGAGGCAAAGCTACTTTGGCGAACCACAAAAAAcgtgttcatttaaaaaaatataatatgttttgTGATATTTGCAACAAGGGATTTCTTCATAAAAGTGAATTAAATAAGCATAAAAAATTCACCCATGAAGGTGAGGTAAGAATCATTGCTTGCACACAAGAAGGGTgtaagaaaacatttaacacCTACTCGGGATTGCAGTACCACATACACGCACGACACACCCAAGATCATCCGGAATTCGTGTGTGGAGAGTGCGGAAAAACGTTCAATTATGCCTATAAATATCAAAAGCATCTTCGATTTCACAAACTGGGATGTCCACTATTCAAATGTAAAGTTTGCGAAAAAACTGTTACCACAAAGAGTAGTTTAAATAATCATATGCGCATCCATACGGGAGAAAAGCCGTTTGTTTGTGAACACTGCGGACAAGGTTTTGTGGGGAAAGCGAACCTCAAGACTCATTTGGTAGTTCATACAAAGGAAAAACTTTTTGCTTGTAAATTTTGTGATAAGAAgttaaAACCGGAGTCAACCGATGCCATTTTTCAGTGTATACGCTGTGACGTAATTTTAGAAAGTTTTGAAGAACTTACGACCCATGAAAAGCAGTGTTTTCATCAAGATAGCAGGTTAACTGATGCATATCTGAAAAGCATAAACTGGACTTTTAAGACGGATCATAAAAAAGGAGCGATTTTTTCCTGTTTAGAATGTGACAAAACGTACGCCACAAATGACAGTTTAAGGGCACATATAAGACATATTCATAAGCGAATAGAAGAATGTTCTTGTCCTGAATGCGGAAAGACATTTCTAAGGAAGTGGATTATGACCAAACACATCGAGACGATTCATAGAGGAATTTATGATTACGTTAAATGTGACATTTGTGGTGAAAACTTTAAAGGCAAGGGTGCTCTCAAGAAACATAAACAGATTATACATGATAAGAAATTTAACGTGTTCTGCGATATCTGCAATAAAGGATTTCTTTACAATGGCTTATTACTAAGACACAAAAAAAAGATCCACGAAGGCGAAGTCACTATAATTGCCTGCACACAAGAAGGATGCAAGAGAACGTTTGTCAATAGATCAAGTTTAACGTATCATTTGGACGCCGAGCATGTAGCAGAAAAGCGTGAATATCGGTGTGATCAATGTGATAAAACCTACAACCATCCTTTCAACTTTCAAAAGCACCTTCGATATCACAAAAAAGGACGTCCTTTGTATAAATGCAACGTTTGTGAAAAAACCATAACGTCTCGTACTAGTATTGAAGCTCACATGCGCACACATACGGGAGAGAAGCCCTTTGTTTGTGAGCTGTGCGGAATAACGTTCGCGCGACTAACTTCTCTAAAAAGTCACATGGTCACTCACACTAAAGAAAAACCTTTCGCTTGTAAATTTTGCGACAAGAAATATACTCAACAAGGTCCTCTGAGACAGCATGTTAAACGACATCATCCGGAATTATTGGTAAATAAACTTCATGATCTCGAGGTGAACTCTGATGATGCCAATCAAACTATTGATAATAATGGAACTGAAAATGATAATCTCGAGGAAGAAATAGTTATAAAGCCCAGTGGGCCAAGAGATAGCGaagacgagaaaacttaa
- Protein Sequence
- MNDLIIVPRKTSTPQINIESKSAKDKQPIVKVEKKEKFPCPECGKLFAKRKHLNAHVNTVHKRAKATPCTECGKVFVTKGSWKNHVDIIHRGIINNFPCETCGENFTSKSSLKFHRIHTHVQKFKFHCDICNKGFIYDSALKQHNTVAHGDGVPTLPCPEEGCTKAFVTTGGLKYHMRAEHTEDKPELLCAHCGKTFDHPTVYSKHLRFHKIGRPEYKCSICQKMIKSRNGLQGHMRIHTGEKPFICEQCGTGFRTRTILKKHMVVHTKEKPYACKLCDKSKSQSSTSKIFNCDNCNLGFQTRWKFGIHKRKCCEVGKKSECPKEKTSVLEKENEGIKTFSCPECGKVFAKKNYLNKHVNFLHKRTQMTSCTECGKIFTKKWCLKKHIETIHRGIINYFKCDICGENYTSKFILQNHKNTVHLKNFNVFCDICNKGFIYDSGLKHHKKLAHCDEVIIIACTQEGCRKTFKTPGSLKYHIDAEHTPDKPVFLCGECGKIFNHPFNYKKHLRFHKKGRPLYTCKLCDKVLASRTSLDAHIRIHTGERPFVCEQCGLCFTRKNLLKGHMVVHTKEKPYACKFCDKKFKLEPVIVTYQCIQCADVLESNEELYTHEKICFIQKYKKRQKKNPIKKRNEIEPRSVCQECGKSYATPRLLTEHIKYIHKRGEMSYCEECGKTFTRKWILKQHIDVVHEGNAKHFTCEICGKTVRGKATLANHKKRVHLKKYNMFCDICNKGFLHKSELNKHKKFTHEGEVRIIACTQEGCKKTFNTYSGLQYHIHARHTQDHPEFVCGECGKTFNYAYKYQKHLRFHKLGCPLFKCKVCEKTVTTKSSLNNHMRIHTGEKPFVCEHCGQGFVGKANLKTHLVVHTKEKLFACKFCDKKLKPESTDAIFQCIRCDVILESFEELTTHEKQCFHQDSRLTDAYLKSINWTFKTDHKKGAIFSCLECDKTYATNDSLRAHIRHIHKRIEECSCPECGKTFLRKWIMTKHIETIHRGIYDYVKCDICGENFKGKGALKKHKQIIHDKKFNVFCDICNKGFLYNGLLLRHKKKIHEGEVTIIACTQEGCKRTFVNRSSLTYHLDAEHVAEKREYRCDQCDKTYNHPFNFQKHLRYHKKGRPLYKCNVCEKTITSRTSIEAHMRTHTGEKPFVCELCGITFARLTSLKSHMVTHTKEKPFACKFCDKKYTQQGPLRQHVKRHHPELLVNKLHDLEVNSDDANQTIDNNGTENDNLEEEIVIKPSGPRDSEDEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -