Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.18 1.1e+02 4.3 0.9 16 38 32 51 24 57 0.86

2 8 6.2 3.7e+03 -0.6 0.2 2 26 47 70 46 71 0.75

3 8 2.6e-07 0.00015 23.0 0.6 3 38 76 112 75 112 0.92

4 8 0.16 94 4.5 0.4 13 26 114 127 113 142 0.86

5 8 1.8 1.1e+03 1.1 0.3 17 28 145 156 127 164 0.80

6 8 0.074 45 5.5 1.3 11 27 195 213 185 223 0.83

7 8 4.4 2.7e+03 -0.2 0.2 18 29 232 243 229 254 0.79

8 8 9.7e-05 0.058 14.8 1.4 12 44 254 283 243 283 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.18	1.1e+02	4.3	0.9	16	38	32	51	24	57	0.86
2	8	6.2	3.7e+03	-0.6	0.2	2	26	47	70	46	71	0.75
3	8	2.6e-07	0.00015	23.0	0.6	3	38	76	112	75	112	0.92
4	8	0.16	94	4.5	0.4	13	26	114	127	113	142	0.86
5	8	1.8	1.1e+03	1.1	0.3	17	28	145	156	127	164	0.80
6	8	0.074	45	5.5	1.3	11	27	195	213	185	223	0.83
7	8	4.4	2.7e+03	-0.2	0.2	18	29	232	243	229	254	0.79
8	8	9.7e-05	0.058	14.8	1.4	12	44	254	283	243	283	0.81

Coding Sequence: ATGGACGAAGAGATAGAAGACGACTGCAATGTTTTTAAACCTTTATATGTTGATATGGTCAATGAATCGTCAGAATCAATCAATATTCAATTGAAGTTTCCCTGCCTGTTTTGCGAAGAATCATTTAATTGTACAAGGAACCTAAAACAACATACGGACAGTCACAAGAAAAATGGACTTTTCCCATGTCCTTTCTGTCCAAGGAATTTTAAACTGTATTTGGATATTAAGAAGCATTTCACAATACACGACCCCGATAGAAAAGCCTTTCAGTGCGAAATATGTCTTAAGGTATTTACGTCCAATGGAAATCTGACGAGCCATATGAGAAGACATAATCAGGAATACTCTGTAGAGTGCGAACTTtgcgacaaaaaattttataaactatCCGAAAAAAAACTACACGTACAAGAAAAACATACGGGAGGTTTGGTGTGTGCTCAATGTGGGAAACGTTTCACATCAGCAACGATGTTTCGCATGCATAAAAGAATTCACGCCAAACCGATAAAGAAGAAATGTCATTACTGCCAAGAAATGTTTGCTTTAGATTACATGCAATGTCACCTGGAAAGATGCGATCGAAATACCGATAAACAAACGTTTATTTGTGATCTCTGTGGGAAAACGTTGAACTGCATCGCTCATTATAGAGCCCACATGCAAGTGCACAACGGGAGTCTACCGTTCGAATGTGATGTGTGTCAGAAGAGGTTTACGCAAGAGTCTGCTCTTAACGTGCACAAAAATACTCATTTAGACGGTCAACGGTTTCAATGTAGATACTGCGATAAATCGTATTCGCGGCATTTCGGGGCCAGGAGACATGAAGTACAAAAGCATCCATTTGAGAGCAATTCAATTAAATCGGAATGA
Protein Sequence: MDEEIEDDCNVFKPLYVDMVNESSESINIQLKFPCLFCEESFNCTRNLKQHTDSHKKNGLFPCPFCPRNFKLYLDIKKHFTIHDPDRKAFQCEICLKVFTSNGNLTSHMRRHNQEYSVECELCDKKFYKLSEKKLHVQEKHTGGLVCAQCGKRFTSATMFRMHKRIHAKPIKKKCHYCQEMFALDYMQCHLERCDRNTDKQTFICDLCGKTLNCIAHYRAHMQVHNGSLPFECDVCQKRFTQESALNVHKNTHLDGQRFQCRYCDKSYSRHFGARRHEVQKHPFESNSIKSE

Sequence clustering based on sequence similarity using MMseqs2