Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.0005 0.075 14.1 0.1 2 42 21 60 20 63 0.76

2 2 0.083 12 7.0 0.0 26 42 77 93 75 96 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.0005	0.075	14.1	0.1	2	42	21	60	20	63	0.76
2	2	0.083	12	7.0	0.0	26	42	77	93	75	96	0.84

Coding Sequence: ATGTACTTTCAGATGGAAATCgcaaagaaaaacaataaaaaggcaaataaaaaatatagtgaaGAATTAATTCAGAAAGCGCTTAGTGAAATAAGAAATGGAGCCCCCAAAAAGTCGATAGCCAAGAAATATAACATACCTAGAGCCACGCTACAATTACGATTAGaaacaaaattatcaaaaattagaTCTGGACCAAAAACTTACCTGACTCAAAAAGAGGAACAATATAACATACCTAGAGCCACGCTACAATTCCGATTAGaaacaaaattatcaaaaattagaTCTGGACCAAAAACTTACCTGACTCAAAAAGAGGAACAACTTCTCGTAGAATGGATATTAGAGAGTCAACAAAAATGTTTCCCGAGACGAAAAGTTGACGTTCAGATATCTGTAAAACAATTTTTGGATGCTGATAAGCGTTCAAAcccatttaataataatatgcccggtGACACTGGTATAGAAGAGCCCAGTAGAGTGTACAACGGCGATGAGACTTGTTTCCTGTACTGCCCTAGGCTTGACAAAGTATTAGCTGCCAAAGCAGAGAAAAATGTGTATGAAGTTGACAGAGGTCAGGCAAAACAAAATCTAACTCAGTTCAGTTTTTCAGCCTTAGATGGTAAAGAAGTGGTGGCGATTGAGAAAGACGTTACATACGAAATAGAAATTGATGGACACGTATCATTTTCCGAAGACGAATTATTAAACATGCCAATTGTTTTTGAGATTTCCCAGATGGATAACAAAGAGGAACTTGAAACTGACTGTGTGGAGAACAAAGAAGGAATAGTAAATAATGATTTTagcgataataaaaaaaaacggaaaCCCAGAACCTCAAATAGAGAGGAAAGAAAATATATCTTGCTTTGA
Protein Sequence: MYFQMEIAKKNNKKANKKYSEELIQKALSEIRNGAPKKSIAKKYNIPRATLQLRLETKLSKIRSGPKTYLTQKEEQYNIPRATLQFRLETKLSKIRSGPKTYLTQKEEQLLVEWILESQQKCFPRRKVDVQISVKQFLDADKRSNPFNNNMPGDTGIEEPSRVYNGDETCFLYCPRLDKVLAAKAEKNVYEVDRGQAKQNLTQFSFSALDGKEVVAIEKDVTYEIEIDGHVSFSEDELLNMPIVFEISQMDNKEELETDCVENKEGIVNNDFSDNKKKRKPRTSNREERKYILL

Sequence clustering based on sequence similarity using MMseqs2