Bpel001400.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022556.1:2062514-2063094[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-06 0.00071 20.6 0.0 3 35 20 53 18 59 0.92 2 2 5.3 7.9e+02 1.2 0.0 17 28 142 153 139 156 0.88
Sequence Information
- Coding Sequence
- atGCCACGAAAGTATATTAGGCAGCCTGGACCACGCGCATATAAAAATTACACGCTCGAGACGCTTCAGGAAGCACTTCGAAGTATAAGAGCTAAAACACTAAGTATACGAGATGCTTCGGACAGATATAGAATCCACCGCAATACCTTGTTATTAAAGATGCATGGAAAACATACTCTTCCCGCTGGTGACCAAACGGCATTAAACAATGAAGAGGAGCTATCAATTATTGCTCATATAATTGCTGTATCCACGTTTGGCTTCCCTGTTACAGCACATGACCTCCGTTTTATTGTAAAGGCTTATCTAGACAAGAGAGGAAAAAAGGTAAAAGCTTTCAAGGACAATTATCCCGGCAAAGAATGGGTAGCATCATTTCTTAACAGACACAAAAATATTCTTGCCAATCGAATGGCTCGAAACATTAGTATTGCGAGAGCTGCTGTGGATCACGAAATCATAAATAACTTCTTTAATAATCTAGAAAATGAGTTAGAGGGTATTACTCCATCTAATATATGA
- Protein Sequence
- MPRKYIRQPGPRAYKNYTLETLQEALRSIRAKTLSIRDASDRYRIHRNTLLLKMHGKHTLPAGDQTALNNEEELSIIAHIIAVSTFGFPVTAHDLRFIVKAYLDKRGKKVKAFKDNYPGKEWVASFLNRHKNILANRMARNISIARAAVDHEIINNFFNNLENELEGITPSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00195993;
- 90% Identity
- iTF_00195993;
- 80% Identity
- -