Bpel025088.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022560.1:65064601-65068296[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 1.6e-05 25.9 0.0 1 41 9 50 9 54 0.91 2 2 2.9 4.2e+02 2.1 0.2 12 23 122 134 121 136 0.76
Sequence Information
- Coding Sequence
- atgatgtataccagACCCCTTTGGACAGAAGAACAACTTTCTTTAGCTGTGGAAAAGGTTAAATCTGGTGAAATATCGAAGCATGAAGCATATATGAGGTACGGTGTGCCAATAAGGACAATTACTCGTAGAATAATTTCTGGAAGAGTCAGGAAGGGTCCTTTGGGACCTGAAGGAGTCCTTGGAAGGGAGAATGAGAGAAGACTAGGAGCAAGAGGATTCGCTCCGGACCAAACCATTGTACGAAAGCTAGCTTACAGTTTTGCTGAGATGTTTCACGCCAAACACAAATTTTCTCACGAAAGGAAAAAAGCTGGTCACCATTGGTTTCTATCATTTATGGAAAGGAACCCAGATCTGTCAGTGAGACAATCCGAAGGATTATCATTGTCAAGAGCGCAAGGTATGAATAGAAGAGAAGTGACTGAATTTTTAAACTTCTGGAAAATACTGTTACCGAGAATAATCTGGTAA
- Protein Sequence
- MMYTRPLWTEEQLSLAVEKVKSGEISKHEAYMRYGVPIRTITRRIISGRVRKGPLGPEGVLGRENERRLGARGFAPDQTIVRKLAYSFAEMFHAKHKFSHERKKAGHHWFLSFMERNPDLSVRQSEGLSLSRAQGMNRREVTEFLNFWKILLPRIIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00195958;
- 90% Identity
- -
- 80% Identity
- -