Bbre002892.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- RREB1
- Assembly
- GCA_031353405.1
- Location
- JASFAT010000674.1:142455-148234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 1.4 9.6 0.9 1 23 86 109 86 109 0.96 2 11 0.019 1.2 9.8 0.1 1 23 298 320 298 320 0.97 3 11 0.001 0.066 13.8 0.4 1 23 329 351 329 351 0.99 4 11 0.00065 0.041 14.5 2.0 1 23 357 380 357 380 0.97 5 11 0.0026 0.17 12.6 1.6 1 23 732 755 732 755 0.96 6 11 0.00022 0.014 16.0 1.3 2 23 950 971 949 971 0.97 7 11 0.022 1.4 9.7 5.3 1 23 977 1000 977 1000 0.97 8 11 0.078 5 8.0 1.3 1 23 1033 1057 1033 1057 0.91 9 11 0.44 28 5.6 0.3 1 21 1082 1102 1082 1105 0.84 10 11 0.0016 0.1 13.3 0.2 2 23 1145 1166 1144 1166 0.96 11 11 0.025 1.6 9.5 5.3 1 23 1172 1194 1172 1194 0.97
Sequence Information
- Coding Sequence
- ATGAATTGTAACTTGTTATCCTTTGTCTTTGCAGAAATCAAAACAGAAGTCATCAGTGAGGCAAAGATCGAAAGCGGGGAACGGCAAGGGGGAACGATGAAGTTCGAAAATAATGATCTAAGATCAACAAGAACTACCAGCATCGACAGTGACAACAGATCGGACAGAAGCGATGAAGAAGATTCCAGAAGAGCCAGGAAACGAGCAGCATCCACATCGCCCTCGCCTATGCCCTTAGATAAAAGAACAACACGCTTCGAGTGTCCAAAATGTTTCCAGCGTTTCGACTCCGCAAATACGTTTGACATCCATCGATTCACAGCTCACAGTGATGAAACTAGATCCAGTTTTGAAGATATCAGATTCACAGATTTTTCAACCAAAAAGTTCCCGGAGATAGCACGTGGAATTTGCGGTCGTAATACCCATATGTCTATAACAGAACAAAGATACAGATGCGATCTATGTTTTCGTGATTTTCCTTGCGGCCAAACATTAAACATACACAGAAAAACATGTTCCTCTTCTGGCAAATCTTGCAGTCCTGATCGAGATCGCAGGGAAGATTTCTTTGCTAAATTGGACTTACGAAACAGATCTTTCGGAATTCCGGGCACACTAACACCACCAATGGAAAGGACACCTAAGTACGATGAAGGACACTTAGGTGGAAATGGTATACGGCATATTGATGCTGCTCGAGACTTAGCCGATATACaatctattttaaatgtaacatcTGCTGGAAGCCTCCTAGAAAGATTGACAGGAAGAGTCTCATTAGAAAGCGCTGTATTAACTCCACCTGATACAATTGTAAAAGAACGTGAACAAGAGGAAACTCAAGATAATTTCGCAGCTGAATTTAGACGTATGAAGTTGCGTGGAGAATTTCCCTGTAGATTATGTCCAGCAAAGTTTCCCAACCTTAGAGCACTTAAGGGACATAACAGAGTACATCTTAGTGGAACAGGACCTGGACCTTATCAGTGTAATATGTGTCCACATGCATCATTGGACAAGGCAGCTTTAGTAAGACATATGCGTACGCACAATGGGGACCGACCTTATGAATGTGCTGTTTGCAATTACGCTTTCACCACCAAAGCTAACTGTGAGCGTCATTTACGCAATCGTCACGCGAAAGTTACAAGAGAAGACGTGAAACGATCTATTATTTATCATCCCTCAGAAGATCCAAATAATGATGAAGTGAATTCAAAATTAGCTCGAGAAGAAGTAAAGAGATCTTTAGCTTTCCATACCCCCGAAGTCGAGAGACGAAATGAAAATACAGGACGTGATACTCCTTTATCACATTATACGCCTACTTTTGCTGCTGACCGACATCCAGTTGCTGCTTTAACGACCAAACCATTGTCAGAGTCACCTACATTAACTCCGAGGGAGTTAGAGCAATCCTTTCCAAGAATTAAGGTCAAAGGGATTGGGGAACTGACACAGATACCAGAATTTAGACCACCTGAGTTGTCATTCAAAGCCAATGCTCCCTCTGAATCTTACGATGATGATGGGCCAGTGGATCTTAGTACAAGCGATAATAATAGTTGTGATGTTCTCGATCTCAGTAAAAAGAAACGTACAGAGGAAGAGGATGAGTGTAAGACAATACCACGTCCATCTTTTGAGTCCAACTCCGCCTCTGCTGCAGCGACTGCAGCAGCATCAGCTTTCGAAAACACTAGATTTCTTTTCGCTCAACAAAGACTCTTCGAGTCATCTCTACCGAAAATAGACCCTGCTTACTATGCTACTCAATTATCTCAATTATATGCTAGCGCCGTACCTGGACTACCAGGCCTAGCCATTCCACCGTCTGCGTTTCCTATAAACCCTTACTTTCTTCAAACTTCGTTTTTTCCTCACCCAACAGATTCACAGGAACTTGCCGAAATAAAGCAGCGTATACATAAAGAAATCATCCGCGGACTAAGTATGTCAGGAGGCCGACTAGTTACTGGTGAAGAAGAAACTCAAACGAAACAAGAACCTGAGGAGGAAGATCAAAAACCTATTCCTCAGGCTACATCTCCCACTCCACCGCCTCGTCCCGAATCACCAAAACCTTTGAACAACAATCTCGTTGCTCAAAATGACTCAGTCAAGATGGTCATAAAAAACGGTATTCTCATGCCTAAACAAAAGCAAAGACGCTATCGTACAGAACGACCATTTTCATGTTCGCAGTGTTCGGCTCGGTTTACTCTACGTTCCAATATGGAACGTCACGTGAAACAGCAACACCCTCAACATTGGAGTGTACGAAGACCAACGCCAAGAGCTCCCCCGCCATACCCCACTCCAGACACTTTGACCGATCGTGTTAAATTCGCCCTTTTAGCCCGACATTTGGAAAGACCGTTGCAACAAAGTGACCGCTCACCGATACGCAGAGATTCAGATGAAGTAGCTGACAATGAGGAAGATGAAGATGACAACTTGGTCATTGATGAAGAGCCTGAACAAGATGTAAAGCCTTTGGAAAATACTGCTGCACACAGAGCAGCAGCAGAAATATTAATGGCGACACGccaacaagaaataaataaagacttcGATCTTAAAATAGCTGGGAATCTTATCAATAAACCTGTTCCCATCACCGCTGAAAAATCTGAAACTGGCACAGATCCTATTCCGATATCTGAACCCGTCACTGTTCCGGTTGTTCCTACACGCAGTGATGAAGAAGAAGATGAGGAAGGCTTGGTTGCTTCAACAAGCGAAGGCAACAATTCTGGAAGCGATgaaaataaATCTGAATCCGACACTGGCAATCAGCCACCTAAGAAGAAATCCGCTTATAGTCTGGCTCCAAATCGGGTCTCCTGTCCATATTGTCACCGAAAATTCCCCTGGTCTTCTTCGCTACGTCGCCACGTACTTACTCACACCGGCCAAAAACCTTTCAAATGTCCTCATTGCCCCCTTCTATTTACAACGAAATCCAACTGTGATCGCCATTTATTGAGAAAACATGGAGGCTCCGCTAGAGCTATACTAGCTGAACCAATATCAGACAACGTATCCCCACCGCAAGCGAACAACGATATAAGAACGGTTCCAGAAAGACCTTTCAAATGTGCTTCCTGCCCGACTAGTACATTCTCTTCTTTGGAAACGCTCAAGAAGCATATGTCGTCCCGACATGGTACAACCGATTCACAGCCTGGATCTCCAAATCCTGAGGTGTCTGATGAGTTAACGGATGGTGGACTAGTGTTCAAGTGTCATCTGTGCGAGGGGTCTTTTAGTGAGAGAAGTCTGGCTCTAGGACACCTAGCTGCGAATCATTCAGCTGAATATGACTTATTAGTTAGCAAAGGAGCGCTGGATGGAAACAGCGACCGCAGTGAGAGTGCTGACGATGACGAACGCGGCAAGTTTCCAGATCACGCCAACAGGAAGGTCGTGTGCGCCTTCTGCGTTCGCCGCTTCTGGTCCGCCGAAGACCTGCGTCGCCATATGCGTACACATTCCGGCGAACGGCCATTCGCCTGCGACCTCTGCCGGCGGCGCTTCACCTTGAAGCATAGCATGCTACGTCACCGAAAGAAGCATCGCGACGAGATCACCGATGATGAAGAAGCCTCACCGCCTAACACTCCGCTTGAACCTGAGAACGTCACTAATGGATATCGCTACCAAGATGACGAGGGATCCGGCAGCGAAATACCTAACAATGTCAACAATAACAACTCACCGCCCTCCGCGCCCTACAGCAAGAAACTTAAATTGGAAATGACGTCACGAAAATACTCTTCAGAAGCAGAAAACGACACCGAGAATGGTGGTGACCTCATTGGAAAACTTTTGGGTATACCAGACAAAACTATCATCAACAAACTACTCTCTTCGCCGGATGAGGCAGCGAAATTTCTTGGAGTGAACAAATGA
- Protein Sequence
- MNCNLLSFVFAEIKTEVISEAKIESGERQGGTMKFENNDLRSTRTTSIDSDNRSDRSDEEDSRRARKRAASTSPSPMPLDKRTTRFECPKCFQRFDSANTFDIHRFTAHSDETRSSFEDIRFTDFSTKKFPEIARGICGRNTHMSITEQRYRCDLCFRDFPCGQTLNIHRKTCSSSGKSCSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERTPKYDEGHLGGNGIRHIDAARDLADIQSILNVTSAGSLLERLTGRVSLESAVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEVERRNENTGRDTPLSHYTPTFAADRHPVAALTTKPLSESPTLTPRELEQSFPRIKVKGIGELTQIPEFRPPELSFKANAPSESYDDDGPVDLSTSDNNSCDVLDLSKKKRTEEEDECKTIPRPSFESNSASAAATAAASAFENTRFLFAQQRLFESSLPKIDPAYYATQLSQLYASAVPGLPGLAIPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIHKEIIRGLSMSGGRLVTGEEETQTKQEPEEEDQKPIPQATSPTPPPRPESPKPLNNNLVAQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDTLTDRVKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDNLVIDEEPEQDVKPLENTAAHRAAAEILMATRQQEINKDFDLKIAGNLINKPVPITAEKSETGTDPIPISEPVTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDNVSPPQANNDIRTVPERPFKCASCPTSTFSSLETLKKHMSSRHGTTDSQPGSPNPEVSDELTDGGLVFKCHLCEGSFSERSLALGHLAANHSAEYDLLVSKGALDGNSDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEASPPNTPLEPENVTNGYRYQDDEGSGSEIPNNVNNNNSPPSAPYSKKLKLEMTSRKYSSEAENDTENGGDLIGKLLGIPDKTIINKLLSSPDEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- -
- 80% Identity
- -