Bbre011307.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010002598.1:48998-60624[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0065 0.42 11.3 0.4 1 23 218 241 218 241 0.94 2 10 0.039 2.5 8.9 2.3 1 23 248 270 248 270 0.97 3 10 0.00054 0.034 14.8 0.7 1 23 274 297 274 297 0.96 4 10 0.0002 0.013 16.1 0.7 1 23 333 355 333 355 0.98 5 10 0.004 0.26 12.0 1.3 3 22 367 386 366 390 0.89 6 10 0.023 1.4 9.6 0.5 2 22 436 456 435 460 0.90 7 10 2.2e-05 0.0014 19.1 0.4 1 23 468 491 468 491 0.91 8 10 0.00022 0.014 15.9 3.4 1 23 497 520 497 520 0.96 9 10 0.00026 0.017 15.7 0.5 3 23 529 550 527 550 0.88 10 10 0.22 14 6.6 4.0 1 23 556 579 556 579 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATAACAAAAACCTTTGTAGAGGATGTCTTTGCGGTGATCGCAAAATGTTAATACTTAACGACTACTTGATGAAGGAATGCCTTTGGAAAATAATGAGCGATATTCcgATGATCCAACGAGAGCATATCCCAGTGTGGTTGTGTTGGGAGTGTGATGCACAATTGGCACGCTTTACAAAGTTTAAGCAGCAAGTGATTCAGTCctttgaaatatttgaaaacttcTCCAAACAGAATGTTGAATGTATTCAGTTAAAACAAGCATCCAAGTTGtccattaaaaaagtttttgatattttaataccaCCTTATGAaacagaagaagaagataacttggaaagattaataaaaattgaagttggCTTGGACAGTAAAGTACAGCCAGAAgtagaagtaaaagaagaagataatatCTCTGTGTTCTCTAATTTAGATatagatgatgataataaagcaCTAGCAGAAGTAGcaaagagaaagaaaaagaaaactcgCAAAGTATTAAACGGTAGTAAAAAGAAGAGAAACAAACTGAATGATGAATTAGAAGTAATAGAAATGTACAAAAAAGTAGAATTAAGTAGAGTAGAATTAGAAGAAGAAAGACGACTAATGGCAACTAAAGAAGAATATGTGAATGCTATGTTTCGCTGTGAGAAATGTATAATTTCATTCCCAAATGCTGATGATTTAAAGgaccattttaatttaaaacatgagTTGAACGCTTCACACTACAAGTGCAATATATGCGAGTGTTCCTTTGCGATCGAGGTGTCTTACAGTTACCACACACAGAGGCACATTTGTCGATACCAGTGTGCTGTGTGCTCGGAGAGGTTCACCAGTAAACGTGATGCGACCAAGCATTATAATCTAGTGCATTGCAGAAGcATTGAcctaaattatgaaatatgcaAAATACAAAATGGACACACAAAAACGATAGATGATATGCAAGATGAAAGTTCACAGCAGGAGGTGCCTTGCTTCCCCTGTGACGTGTGCGCTAAAACCTTTAAATGGAAAACCTCCTTGAGGAAACATCTGGAAACGCATAGAATAGAGACTGGGCAGAAAAGGAAGCCATACTGTGAACCTTGCagGTTATCATTCACGACGACGTCCAACTTGCAAAAACACGTGAAAACAAGTTCGAAACATCAGATACAATTGAAACTAAGGAAGTTAAAAGAAACTCTCATTGAAGAGCCAACGAATCCAGAAAAGCAGCAGGCTCGAATCGCAGCAGATCAAGTGTTCAGTGAACACCATGCCGCCagGGCGAAAGGAGAGCTGGTTTGCGAGCCGTGTAAACGAACCTTCTCATCCATAGCGACCTACCAACAGCATATGAAGATCAGCAAGAAACACGTCTCCGAAAACGACTTCAAATACATGTGCAGTGACTGTGGTAAGAGGTTCGCGAACAAGACTCGTTTGAAAGACCACGTGGATTGGGAACACCTCAAGAATTTCGTCCACACGTGTCCAGTGTGTCAGAAGGTATTCAAAAGTCACACATCCCTCTATCTTCACAAACAAGTCGTTCACAAGAAGGATCATGCGGAGCATCTTTGTGATCACTGCGGAAAACCTTTTCCGAACCAGGCGAAGCTGCGCGGGCACGTGGCGGCGCTGCATTCGCGCGAGGCGCCGTACCGCTGCGGCTCGTGCTCAGCGCGCTTCAGCTGGCACTCGTGCCTCTCACGGCACGTGCGGCGGGTGCACCGGCGCGACAGCGCTCTGCCCACCGCCTAG
- Protein Sequence
- MEDNKNLCRGCLCGDRKMLILNDYLMKECLWKIMSDIPMIQREHIPVWLCWECDAQLARFTKFKQQVIQSFEIFENFSKQNVECIQLKQASKLSIKKVFDILIPPYETEEEDNLERLIKIEVGLDSKVQPEVEVKEEDNISVFSNLDIDDDNKALAEVAKRKKKKTRKVLNGSKKKRNKLNDELEVIEMYKKVELSRVELEEERRLMATKEEYVNAMFRCEKCIISFPNADDLKDHFNLKHELNASHYKCNICECSFAIEVSYSYHTQRHICRYQCAVCSERFTSKRDATKHYNLVHCRSIDLNYEICKIQNGHTKTIDDMQDESSQQEVPCFPCDVCAKTFKWKTSLRKHLETHRIETGQKRKPYCEPCRLSFTTTSNLQKHVKTSSKHQIQLKLRKLKETLIEEPTNPEKQQARIAADQVFSEHHAARAKGELVCEPCKRTFSSIATYQQHMKISKKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNFVHTCPVCQKVFKSHTSLYLHKQVVHKKDHAEHLCDHCGKPFPNQAKLRGHVAALHSREAPYRCGSCSARFSWHSCLSRHVRRVHRRDSALPTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -