Basic Information

Insect: Baronia brevicornis
Gene Symbol: -
Assembly: GCA_031353405.1
Location: JASFAT010001118.1:33627-47930[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.2 13 6.7 7.6 1 23 296 319 296 319 0.94

2 7 3.5e-06 0.00022 21.6 0.9 1 23 483 505 483 505 0.98

3 7 2e-05 0.0012 19.3 0.8 1 23 510 532 510 532 0.96

4 7 1.2e-05 0.00076 19.9 1.9 2 23 539 561 538 561 0.93

5 7 2.5e-06 0.00016 22.1 2.0 1 23 567 589 567 589 0.99

6 7 1.1e-05 0.00073 20.0 3.4 1 23 595 617 595 617 0.99

7 7 3.7e-06 0.00024 21.6 3.0 1 23 623 645 623 645 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.2	13	6.7	7.6	1	23	296	319	296	319	0.94
2	7	3.5e-06	0.00022	21.6	0.9	1	23	483	505	483	505	0.98
3	7	2e-05	0.0012	19.3	0.8	1	23	510	532	510	532	0.96
4	7	1.2e-05	0.00076	19.9	1.9	2	23	539	561	538	561	0.93
5	7	2.5e-06	0.00016	22.1	2.0	1	23	567	589	567	589	0.99
6	7	1.1e-05	0.00073	20.0	3.4	1	23	595	617	595	617	0.99
7	7	3.7e-06	0.00024	21.6	3.0	1	23	623	645	623	645	0.98

Sequence Information

Coding Sequence: ATTCAGTCAGTAAGAAGTGATGTGGATGCATCAGTGATTTTAGATACACCAATTAGATTGTTTAATGGGAACACTTTGGACCAACAAACAGAACCCATTGTGGTGCAAGTACCTCCATCGCTACCACCTTTGCCACcattgcaaaatataaaaaggtgCTCTGAAACAGACTGGttcaataataaagataaaacaacattaaaggatgATACTACAATGCTGGCCGAACCCGACGGTCCAGTGCTAGAGTTGGGTGCAAGTGCTTCTCCGTTGCAGAACAAACAACAAAGCAAGAAGAGCTTGCCACACAAGAAACGGATATCCAGAAAGCTTAAGAGGAATACTGGTAACAGCACTCCGCAGCAGGACATAGTAGTAATCCACTGCAACAACATGTCCCAAGAGGAGATCCTGCCCGATAACTTTGTGACGGATGTGCAGCATCAGGAACACATCCCCGAGGAGACGCACCACATAAGCCACGAGCAATGTCCAGTGCGGTCGGTACTAATTTGTCAGTTGTGCGGAGAGTACTACGGTGAAGAACAACTCAAATTCTATCAACACCTCAAGCAACACTACGAGCCCCATTCCACTATCATCATAGAGAACCCCGTGTCTGACTTGGGAATTGATAAGATGACCAATACCTGTATAGTAGACAATGTTGCAACACTCCCCGATTCTATAGTTGAACTGTCATTGGAGAATACAGTTCCCAAGTCTATGTACCAGTCAATAGACAAGCACATTCTGTACACGTCGAGTGATAAAACACTCTCGTGCCCCACCAATAAGGTTCAGTATACAATGGCCGGCGATAAAGACATACCTCAAGACAGCATCAAGTCAGACTTGTATGATTCGTTGGATAAATTAGAATTTCACAACTGTTTAAAGTGCAATAAATCATTCAGGAAGCAGAAACAGTGCGAGAACCATATAAAGGAATTTCACTCCAACTCTAAGTTGGACGACATGGGTGAGTTTAGTGAACCAGAAGACTTGATGGAGGGTATTCACGTAGCGGTGGAGGATGGTGAACAGTATGAACCGACAATGCTACCTCACCTCATCGTTGAAAATGGCCACATTCACCAGGATCATGTGCGACATtgGTACATGCGTAACGGAAGCAGTGGTGCGAGCCCGGTGTGTTCGTGTAACAACGAGGGCGGCTACTGCCCCGTGTGCCCGCCCCCGGTGCCCGTCTCGTGCACAATGTCCGTGCCGGTCTCCGTGCCACAGTCCCCACCCAGACATCTGAAAGAGGAAGTCTTACAAAGGATATTTGAAAATGAAGTACCAAATTCGGAGACCACCAATTTTACAGAGAACATAATGCCGGAAGACCAACCACCTCTACCTCCGGAACTACCTCACGAAGAAGAACAGAAGTCAGGGGAGACGCAAGTCCCAACAGAGAAGAAGAAACCAACAAAAAAGTTCGAGTGTCCTATATGCGGTCGAGTGTTCCAACATAGGAACAGTCTGCTTTATCACATGCTGATGCATGGAGGTAAACAGCACATATGCAAGGATTGTAACAAAGGATTTTATACAGCGGCAGCGTTGAAGATCCACAGAAGGGGTCACAATGATGACAGGCCGTGCAAGTGTGACGAATGCGGACGCAACTTCCGCCAGTGGAGCGACCTCAAGTACCACAAGGCGTCCATACATTCGGACAAAAAACACTTCAAATGCGAGTTTTGCAACAAAGAGTTCGCCCGACGGTACTCCCTCAACGTGCACAGGCGAATCCACACCGGTGAGAAGAACTACAAGTGTGAATACTGCAACAAGACATTCCGCGCCTCCTCGTATAGACTCACCCACATGCGGACACACACGGgtAACAAACCATATAAATGTGCTCAATGTGAGAAATGTTTCCGAAATGCATATGACCTACGTAGACACACTCTCGTTCACGACAAGGTGCGCCCGAAAGTGGATGATACAAAAGTAAAACCCAAAgatgttaaagataaaaaatctcCGACTAAAGTCAATGATATCAAAACCGAATTGGATCAAAATGTTGAACAGGAGTTTGATATGAAATcagaaaagaaagaaacaaCACAGAGAGTGccaatattaagaaatattctGGATAAAAAGCAACCACAGAAACCCACAAGAAAACAACAAACAGCCAAGAAAGGTGCTCCAAATGTAACAGTGAATCCTAACAGAGATGGcccattcaaaataaatacagaatacACAAACAACGTTGAGGTCTTTGACACAAGACCGGcagaacaatataaatataaagacattTATTCACCTACAGCCGAATACAGAAAAGATGAAGCGGTACAgcagtacaaaaaaaattatcaagacGATATAGTCACATACAAAGATAGCGAAAGACTGACTGAAGAAAGAGATTTAGCCGTACTTAGACCAATGTTCAGAACTAGTCCACAAATGGAAGATTTAGAAAAGCCCATCCTAAGGCCCGAGAACACAGACGGAAAGCTCCAAGTGTTCACTCATATAGAGAAGAACAAAGATTATGTTCCTGTTGTGACTTCACATCCTCATACGGTTCCATTAAACGATATAAGACATTCAGATAGAGATATGAATAGAGATCCAAGAAACGATTCACTCACCGGCGAGAGTATGGAGACTGTCTTCTTTGAAAAAATCAACGCTTTGTACAATTTGACGGCAGTTTGA
Protein Sequence: IQSVRSDVDASVILDTPIRLFNGNTLDQQTEPIVVQVPPSLPPLPPLQNIKRCSETDWFNNKDKTTLKDDTTMLAEPDGPVLELGASASPLQNKQQSKKSLPHKKRISRKLKRNTGNSTPQQDIVVIHCNNMSQEEILPDNFVTDVQHQEHIPEETHHISHEQCPVRSVLICQLCGEYYGEEQLKFYQHLKQHYEPHSTIIIENPVSDLGIDKMTNTCIVDNVATLPDSIVELSLENTVPKSMYQSIDKHILYTSSDKTLSCPTNKVQYTMAGDKDIPQDSIKSDLYDSLDKLEFHNCLKCNKSFRKQKQCENHIKEFHSNSKLDDMGEFSEPEDLMEGIHVAVEDGEQYEPTMLPHLIVENGHIHQDHVRHWYMRNGSSGASPVCSCNNEGGYCPVCPPPVPVSCTMSVPVSVPQSPPRHLKEEVLQRIFENEVPNSETTNFTENIMPEDQPPLPPELPHEEEQKSGETQVPTEKKKPTKKFECPICGRVFQHRNSLLYHMLMHGGKQHICKDCNKGFYTAAALKIHRRGHNDDRPCKCDECGRNFRQWSDLKYHKASIHSDKKHFKCEFCNKEFARRYSLNVHRRIHTGEKNYKCEYCNKTFRASSYRLTHMRTHTGNKPYKCAQCEKCFRNAYDLRRHTLVHDKVRPKVDDTKVKPKDVKDKKSPTKVNDIKTELDQNVEQEFDMKSEKKETTQRVPILRNILDKKQPQKPTRKQQTAKKGAPNVTVNPNRDGPFKINTEYTNNVEVFDTRPAEQYKYKDIYSPTAEYRKDEAVQQYKKNYQDDIVTYKDSERLTEERDLAVLRPMFRTSPQMEDLEKPILRPENTDGKLQVFTHIEKNKDYVPVVTSHPHTVPLNDIRHSDRDMNRDPRNDSLTGESMETVFFEKINALYNLTAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -