Bbre003290.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010000743.1:202670-217040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 6.8 7.5 0.9 1 23 262 285 262 285 0.96 2 12 1.3 83 4.1 0.1 2 23 294 315 293 315 0.94 3 12 1.1 73 4.3 0.1 1 19 319 337 319 339 0.89 4 12 8.2e-05 0.0052 17.3 3.2 1 23 347 370 347 370 0.93 5 12 0.0043 0.27 11.9 1.0 2 21 375 394 375 395 0.92 6 12 0.00042 0.027 15.1 0.8 2 23 411 432 410 432 0.93 7 12 5.4e-05 0.0034 17.9 0.6 1 23 437 459 437 459 0.98 8 12 4.3e-05 0.0028 18.2 5.0 1 21 468 488 468 493 0.94 9 12 0.00037 0.024 15.3 2.3 1 23 501 524 501 524 0.92 10 12 0.0014 0.087 13.5 0.2 1 23 530 553 530 553 0.96 11 12 0.03 1.9 9.3 0.4 3 19 567 583 565 584 0.89 12 12 0.0055 0.35 11.6 1.2 1 23 597 620 597 620 0.98
Sequence Information
- Coding Sequence
- ATGAaggaaataaacattaatatcgAAGGTTATAACGTAAACGGAATATGTGTGGGTTGTCTTAATTATAATCGTAAGATGTTTTACCGCGATGAAGTGAAggagttttttaaaatatgggcGAATATAGATGTTCCAGATGGGTTGACAATCCAGGTGTGCTGGGAATGTCTGGCTGCGGTGAAAACCGCTGTTCGTTTTCGTACTCAGATTCTGTCTGTGTTTGATGTACTTATGGATTATTCTAGACAGAATACATTCCTGAACTCACCAATGGATTTTGCTAAGCACGCCACCGCAAAATTATCAATTGTCACGTTGGATATGGCGTCATCCGAAACACTGGAGTTtaaggaagaagaagagaaagaaGATCTACATATTCATGTAGACGTTATAAAGACTGAAGACGAGGACTGCAATTACGATGTTGAGAAATttgAATCGGAATCTTTAAAGTCAGAACCGGCAATGGATACAGTAGCTGATGAAACAGATGATCACGAAGACGTGGTGTCACAAGATCAAGCCTTATCTGATGACGACATCCTACTATCGAAATTAAAgacgaagaaaaaaaaggaGAAGAAGAGCAAAAAAGAACGGAATAAGAAGAAACGGAATGAAGAGATAGTGAAAGAAGATGAACTATCAAAAAATAAACGGTCCAGAAAACTGACGAATCTCCCAGAAGATCTAGTCGAGTTGTACACTATGAACGAGGAGGAAATGTGGAAGATAAGAGCTGAAGATGTCGCTAGAGATGAATTCGCGGAATTgaaatacaaatgtaaaaactGTATCATCGGATTCAATACAGAGAAACTGATGAATTACCACATGAACGGAAAACACAATCCGaaaggcAAAGACAACATACAATGCGACGTTTGCAAAGCGTATTTCCTGACACGTGAGAACGTGTCGGCCCACCGCGCTTTGCACTTGGCCGCCTACCGGTGTCGCGAGTGCGGGGCGATAACTACCCTCAAACGGGCGATGATGGTACACGCGTGTGCCAAGGGAGCGATGCTGGGCTATCCGTGCAGCACGTGCGGTAAGAACTTTAGtacAAAATCTAAGCTATCGTACCATAGAGGGGTATGTCATCAGGAGCGTCCTCAGTGCGACTGCTGCGGCAAGGTCTTTGCGAACaaaatgacattaaaatatcatttgaaAATATTACCACAGAACAAAGAAGACAAACCCAAAGAGAAGTTATACATTCCTTGCAAAGGCTGCAATAAAGTATTCCATTCCAAGAAGAGTTACAGGGCGCATGCCGTAATACACGAGGGGCTGACGTACCAGTGTCCGATATGCGGCAAGCTGTTCCAGTGGAAACGCAACCTCGCCCGCCACACGCGCAACCACAGGGAGAAGGACGCCGGGGCGCTGCACGAGTGCCGGGACTGCGGCAAGAGCTTCTCCAGCCGCGACTGCTACAACAACCACATGAGGCTGAGCAAGAGGCACGTGCCGGAGACTGCCTACGTGCATACATGTAACTATTGTGGCAAGAAGTTCGCCACGAAATGGTGTATGGTGGATCATATCGATTGGGACCACCTGAAGCTCATCAAATACCAGTGCAGCATCTGTTATAAGCCGTTCAAAACCGCGAAAATAATGGTGGCCCATATGAACAACATTCACGCGGCGAAGAAAAACGTGGAGCCGGACGGGGAGCACCTGTGCGAAGTTTGTGGCAAGTCTTACAAGACGGTGAAGAGACTTAAGGGTCACGTTTGGGCCATGCATACGAACCGCTCATCATCGAAGAGCTTCAAGTGCAAGCTGTGCCCAGCCACGTTCACGTGGCAGACCTCCATATACAAACACATGAAGATGATGCACGACTCCAACAAACGGACAAAGcaatcACGTGCTCTACCGACCGTCAAGAAACAAGAGCCATACCCGGAAGTAGAGCTGACTAACCGGATGCATTACTTCCAGCAAAACATAGCCAGTAATATCGTTCAAAATATAGTCCAGACACCGTCTATACATATTGTACATAATGTGATCTAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYRDEVKEFFKIWANIDVPDGLTIQVCWECLAAVKTAVRFRTQILSVFDVLMDYSRQNTFLNSPMDFAKHATAKLSIVTLDMASSETLEFKEEEEKEDLHIHVDVIKTEDEDCNYDVEKFESESLKSEPAMDTVADETDDHEDVVSQDQALSDDDILLSKLKTKKKKEKKSKKERNKKKRNEEIVKEDELSKNKRSRKLTNLPEDLVELYTMNEEEMWKIRAEDVARDEFAELKYKCKNCIIGFNTEKLMNYHMNGKHNPKGKDNIQCDVCKAYFLTRENVSAHRALHLAAYRCRECGAITTLKRAMMVHACAKGAMLGYPCSTCGKNFSTKSKLSYHRGVCHQERPQCDCCGKVFANKMTLKYHLKILPQNKEDKPKEKLYIPCKGCNKVFHSKKSYRAHAVIHEGLTYQCPICGKLFQWKRNLARHTRNHREKDAGALHECRDCGKSFSSRDCYNNHMRLSKRHVPETAYVHTCNYCGKKFATKWCMVDHIDWDHLKLIKYQCSICYKPFKTAKIMVAHMNNIHAAKKNVEPDGEHLCEVCGKSYKTVKRLKGHVWAMHTNRSSSKSFKCKLCPATFTWQTSIYKHMKMMHDSNKRTKQSRALPTVKKQEPYPEVELTNRMHYFQQNIASNIVQNIVQTPSIHIVHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -