Bbre016633.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010004403.1:66878-77112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.96 61 4.5 0.1 1 23 87 110 87 110 0.90 2 19 2.7 1.7e+02 3.1 0.1 3 23 115 135 113 135 0.95 3 19 0.35 23 5.9 0.3 2 23 139 161 138 161 0.93 4 19 0.05 3.2 8.6 0.6 3 23 394 415 393 415 0.96 5 19 0.031 2 9.2 0.1 1 20 423 442 423 444 0.95 6 19 0.0059 0.38 11.5 0.5 2 23 454 475 453 475 0.94 7 19 4.8 3e+02 2.3 0.7 1 23 491 514 491 514 0.84 8 19 0.01 0.65 10.7 2.0 1 23 523 546 523 546 0.95 9 19 0.67 42 5.0 0.2 2 23 622 644 621 644 0.84 10 19 8.4 5.4e+02 1.6 2.3 1 23 649 672 649 672 0.90 11 19 4.6e-05 0.0029 18.1 1.2 1 23 678 700 678 700 0.97 12 19 5.2e-06 0.00033 21.1 1.7 1 23 707 729 707 729 0.98 13 19 8.3e-05 0.0053 17.3 2.3 1 23 734 756 734 756 0.96 14 19 4.1e-05 0.0026 18.3 0.7 1 23 762 784 762 784 0.98 15 19 1.4e-06 9.2e-05 22.8 1.2 1 23 790 812 790 812 0.98 16 19 2e-05 0.0013 19.3 1.4 2 23 819 840 819 840 0.98 17 19 0.00072 0.046 14.4 0.7 2 23 848 870 847 870 0.97 18 19 0.0058 0.37 11.5 2.2 1 23 875 897 875 897 0.97 19 19 0.1 6.4 7.6 5.1 1 23 903 926 903 926 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCGGACGAGTCGGATGACGAGCCCCTATCAATTATAGCAGCGGCAAAAAAGTTGAATCCTGAAAAGTTTCCTGAACCTGTGGAGGATACTAGTGAACCACcgaaaaagaagaagagaaaatCATCATCCCCTAAGAAATTAGGAGTCACAAATAAAGTGAATCGTAAGCACAGAAGTTTGAATCCACTTCCAATCATAGAGAGACCAGCGGATGTATGGCTTTACCTTAAGGATTTGAGACCAGCAGGACCTTATACTTGCTTGTTATGCCCAGAATGGTTTATTAATCGTTCCAAAATGATAATACACTACGTACTAAATCACAAAAAAGACTTTTGTGGAATATGTCGGTATTTTGTACCAGACAGGGAGGCATGGTATGAACATATTAAATTTCACATTCCTTGGCCCTGTTCACAATGTATTGCAAACTTTCCGAATGAAACATCTTTACGTCATCATCTGAGCAGTGCACACAAATTGGTTCACTGCCGTCTCTGTCACTTTCGACTCACTGATGATGATCAGTAcaacactcatttatttcaaaaacataatgTTACAAATGTGTTAAGTAAGGATGAAGAAGTTCTATGGGACATTGACTTTGAAGGTTGCCAAAAATTTCTTTGTCTCTTGTGTTCCAAATCAGACATCTCAACTTCTACATTTTTTAAGCACTATATGGGCTTCCACCATTTCACTCTCAAATGTTTGACAAGTATAATTTCTGGCAGAGATCCACCATTTACAGTAAATGGTGCTGATGTCAGTTCACATTTTATTGATGAACAACTAAAGGGACAAGTGCGATATGGTTATATAGATTTAGAAAAGACTCCTGCAGAAACAATGTTAGCTATAAGAGATAATAATACTGAAGATGATTCTGTTAAAGCAGAAGTGAAACTAGAAGTTTCAACTGACCTTGAAGATGATGATTCTAAAGAAGATAATGACAAAAGTActggaaaaaagaaatatgacagtattcacaaaaattataaaggcGACGAGGACTTTGATGTAACTTTAACAGAATTAATTGTTCTAGAAAAATGTTACTTTGATTATGTTAGTCATACTCTCAATGATATTAATTGCAATTTGATGCCTGAAAAATCTGATATAGATTATGCAAATGGAAAATCTGATATCATTATGGATGTAGATTGTCCGCTTTGTTCTTCAAAGTATGAAAATGCTCGAGGATTTACTAAACACATGAGTAAAATGCATAATGTTAAATTGGTGCCTGTGTATTCATGTAGAATATGTGCAACAACGTTTGAAAATCAAAATGAACTAGATAATCACACAGCTGAAGAGTTGGGGGCTTTTGAAGATTTATGGATTTGTCAATTTTGCGATAAAGAATTTGATACCAGAGAAGCAACAAGAAGGCATTTAACTGAGCATTGGGAAATCATGGAATATGATAACTGCTTTAGTCCTCACTTgggttttaaatgtaaattttgccCCACACTATTTTGGAATGAGACTGACAGAGAAACACACCAAGTTAGAGCTCACTTTCCCAAATATAAAgatgatttttataaatgtgaGAGTTGTTCGGAAACATACAGTGACAAGgtcTGGTTCATCCACCATTACCTTGAaaagcattttataaataaaataaccacATATCTTTTGAAGTGTTGTATATGCTGTATAGTTTTGCCCAGTGTAGTTGACATGAGGACTCATTTTCGTGAACATCATCCGGAGGCTCAGAAAGTTTATTGCTCATTGGATGCCTGTAAATACAAACCTCTTAGTCATCGGAAATCATTTAAACTTCATGTGAatACGATCCATGGTGCATCAGCGCGCCCCGAAAAAGCTGTCAAATGTGCCGTGTGTGGTCGTGAGTTTGGAAGCTCTCGCGCTTGCGGTGCTCATATGGCCCAAGTACACGGGCCGGGCAAATTCAAATGCAAGCTGTGTAGAGAGGTGCTGCATACCATGGATGAGAGGAAACTGCACTATCTCCTGCGTCATCCAGGACGTCATCCGTTCGAGTGTGTGGATTGTGGAAAATCTTTCCAATATAAGTCCTCATTGTATATGCATCGCCAGGACCACATGCCCAATAAGCAGAGTTTCACTTGCACATATTGTGGGAAAGTTTTCATGAAAAAGGACTCGTTCCGCGAGCACTTGCAGATCCACGAAGGGCcgcggcatgcttgctcgtaCTGCCCCATGCGGTTCGTCCAGCGCTCCAACATGCTGCGCCACGAGCGACGCCACACCGGCGAACGGCCCTACGCATGTCCGCAATGCCCTCGAACCTTCGCTGATAAGGGCGCGTGCAACTCCCACATGAGaaCACATTCAAAAGATACGTCGTACGCTTGCGTGTATTGTGGGCAGACATTCGTCCAGAAGTCCAAGCTAACTTACCACATAAGAAAGCATACTGGAGAAAatttaGAGACATGTCCAGTGTGCTCAAAGATATTCACAAGCGCTTGTTCACTACGTGAACACATGAAGATACATATCAAGAAAAAGGAAATGGTGAAATGTCCTCTGTGCGACAGGAGATACCAAGACGAACGTTACATGCTCCGTCATTTGCGTACGTCTCACACGGGAATGCATCACACCTGCCCTCTATGTCACAAGCCGCTTACTAGCGTGGCGGGCCTACGACACCACGTGCTTTCACACAGCACTGTCAACCTGTTCCAGtgCAAATGCTGCCCGAAATCTTACTCCCTGAAAAAGACTATTATTAAGCACCTACGAAGGCGTCACGGAGTTAAGGGAACTGAGATATACGTGAAAGAATTTTTCAAAAGACTCGATCCAAGAGAATGTCAACTTGGGCTTGATGAGGAGACCATGTTAAGTATATTCGGACCTCCAAAGAAGAACAAAGGCGATAATGTAATTGCTAACTTTGTAACTTTGGCTAAGAACTTTAATCCAAATCAAGTTGTTGGTGGTAACGATGGAGATATAACGGAAGATGAAGAAAACTCGAATGAAAACGAAGAAACAGAAATCAAGTATGATCCTTGTAAAGAGAATGAAAAGATAGTGGTCGATGTGAGTGCtgttgaaattgaaaaagtGAGTATTAAGCAAGAGGTACCAGACGAGGAATTGGAACCAACTGACTTTGTTAGTGTCAAAATTGAACCATATGATGAAGATGAGAATATGGAATAA
- Protein Sequence
- MSSDESDDEPLSIIAAAKKLNPEKFPEPVEDTSEPPKKKKRKSSSPKKLGVTNKVNRKHRSLNPLPIIERPADVWLYLKDLRPAGPYTCLLCPEWFINRSKMIIHYVLNHKKDFCGICRYFVPDREAWYEHIKFHIPWPCSQCIANFPNETSLRHHLSSAHKLVHCRLCHFRLTDDDQYNTHLFQKHNVTNVLSKDEEVLWDIDFEGCQKFLCLLCSKSDISTSTFFKHYMGFHHFTLKCLTSIISGRDPPFTVNGADVSSHFIDEQLKGQVRYGYIDLEKTPAETMLAIRDNNTEDDSVKAEVKLEVSTDLEDDDSKEDNDKSTGKKKYDSIHKNYKGDEDFDVTLTELIVLEKCYFDYVSHTLNDINCNLMPEKSDIDYANGKSDIIMDVDCPLCSSKYENARGFTKHMSKMHNVKLVPVYSCRICATTFENQNELDNHTAEELGAFEDLWICQFCDKEFDTREATRRHLTEHWEIMEYDNCFSPHLGFKCKFCPTLFWNETDRETHQVRAHFPKYKDDFYKCESCSETYSDKVWFIHHYLEKHFINKITTYLLKCCICCIVLPSVVDMRTHFREHHPEAQKVYCSLDACKYKPLSHRKSFKLHVNTIHGASARPEKAVKCAVCGREFGSSRACGAHMAQVHGPGKFKCKLCREVLHTMDERKLHYLLRHPGRHPFECVDCGKSFQYKSSLYMHRQDHMPNKQSFTCTYCGKVFMKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPQCPRTFADKGACNSHMRTHSKDTSYACVYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKIFTSACSLREHMKIHIKKKEMVKCPLCDRRYQDERYMLRHLRTSHTGMHHTCPLCHKPLTSVAGLRHHVLSHSTVNLFQCKCCPKSYSLKKTIIKHLRRRHGVKGTEIYVKEFFKRLDPRECQLGLDEETMLSIFGPPKKNKGDNVIANFVTLAKNFNPNQVVGGNDGDITEDEENSNENEETEIKYDPCKENEKIVVDVSAVEIEKVSIKQEVPDEELEPTDFVSVKIEPYDEDENME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -