Bbre015263.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010003947.1:45710-51271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 1.4 9.7 0.0 3 23 45 66 44 66 0.95 2 20 2.7 1.7e+02 3.1 0.0 2 23 93 115 92 115 0.91 3 20 0.11 7.3 7.4 1.4 2 23 139 160 138 160 0.95 4 20 0.18 12 6.8 2.7 1 23 164 187 164 187 0.97 5 20 0.03 1.9 9.3 0.6 3 22 193 212 192 212 0.96 6 20 0.0021 0.13 12.9 0.3 1 23 219 242 219 242 0.94 7 20 0.029 1.8 9.3 3.1 1 23 249 272 249 272 0.91 8 20 0.0037 0.24 12.1 1.4 1 23 277 299 277 299 0.95 9 20 0.53 34 5.3 0.7 3 23 350 371 349 371 0.95 10 20 0.05 3.2 8.6 0.8 2 23 396 418 395 418 0.89 11 20 1.8 1.2e+02 3.7 1.9 3 23 443 463 441 463 0.92 12 20 0.0011 0.068 13.8 1.0 1 21 467 487 467 488 0.95 13 20 1.2 78 4.2 1.0 3 23 531 551 529 552 0.92 14 20 0.63 40 5.1 0.1 2 23 578 600 577 600 0.93 15 20 0.00064 0.041 14.5 1.6 2 23 624 645 623 645 0.97 16 20 9.3e-05 0.0059 17.2 0.0 1 23 649 672 649 672 0.98 17 20 0.0017 0.11 13.2 0.7 1 23 676 699 676 699 0.98 18 20 0.4 25 5.7 0.4 1 23 704 729 704 729 0.92 19 20 0.00021 0.013 16.0 1.3 1 23 738 761 738 761 0.96 20 20 0.14 9.2 7.1 0.5 1 23 771 794 771 794 0.94
Sequence Information
- Coding Sequence
- ATGTTTGATAATTTGCCGCGGACCGCTGAGGaAATTCGGGTGAATAGCAAATCGAAAGCGAAGCGCAACGCGGAAGTTTTGCTGGAACATTCTACAATGTATCCGTTCAGGTTGCGGGGGAAGCTAATGCTTTGCGTTTTCTGCGGCGAGGAGTACGCCGAACCTGCAGCATATAGGAGGCACATGAACGAAATGCACAAATCATTCACAATGTCGACAGCTTTCGCGCACTGCGGTAGGGGTAAGGAGTGGCTCAAGGTCGATTGCACGGACTTAAGGTGCAAATTGTGCAACGCAAGCGCCGATACCCTCGAGGAAATAGCCGCACATCTGAACGATAACCACCCCAACAGAAACTTGGACGTCAATCACGATATAGCCTTACATCCGTACAGAATGGATACAGATAGATGGCACTGTTATATATGCCCTATGAAATTCCCCAGTATAACCCGATTGTCTAGACACACGACGTCTCATTATCTGAAGTTTACATGTGAGAGTTGCGGCAGGAAGTATCTATCGAATGACGCGTTGAAATGCCACATACGCAGCTTCCACGCTGCGAACCCCATATGCAGGAAATGTAAGATGGAGTTCTCTTCGTTGGAGGAGAGGAAAGAGCACATGAGAACGTCAAAACTTTGCTGGACGTTTCGCTGTATGGAATGCGGCGAGCGGTTTATGTCGTGGGAGTACAAACAGAAGCATCTAGAAGAGGCTCATGGTAAGCAAAAAGCAACGTACACTTGCCCCGAGTGTGGGGAAGCGTTCAAAGAGCGGAAGAGCTGTTATACGCATTTCAAGATGAACCATACAGACGATTCCTTTGTGTGTACATGCTGCGGGCGGAAGTTTGCCTTTTGGCGCGATTTGGAGAATCACAGGGTGGTCCATACCGgaTCCACATTGGAAATACGACGTAGTGACACTGAGCCAAAACCGAAAATAGTTCTGGTGTACCAAACACCGCAGAGGCGTAACGCCGAATTGATTCTCAAAAATTCCACCGCGTACCCGTTTAGGACACGTTTTAGCCAAATACTTTGCGCCTATTGTCACACTGAATACGACACCCTAACGGAATTACGTTTTCACATGGCAAGCGATCATGTCGTTGCCGACTTTAGAAACGTTTTCTATAGAACGAAGGGAAATCTGATTAAAATAGATATCAGCGTATTAGAATGTAAGCTGTGCTCCAAAAGCATTCGCGATATAGACACACTGATGCGACATTTCGCGCACGAACACGGTTTGCCGGTGAAATTCAATGCCCGCTTTGGCGTGCTACCATTTAAGTTGACCGCCGATGGCGAATGGATATGTGTGTACTGTGATAAGACACATTCCGGCTTTGTTGAATTCAAACGTCACATCGGTCATCATTTTATGAACTATGACTGCGATAAATGTGGAACCACCTTTATCTCAGATCACGCTTTGAGAGAGCATCACAGGCAGGTCAAGTGTTATCGTACGGCGTACAAGGCTCGCAACGGCCGTGCACTGAGACCACGCTCCAACGCCGAGATTATCCTACAGTGCTCCTCGGCGTATCCATTCAGAACGTGGATGAGCAATTTGAATTGCGTGTTCTGCAGAGTGAAAACCAGAGATCCCGTCGTGTTCCGCAACCACATGGCGTCTCACCACGAAACGTACGACGTGCGATCGGCGTTCTATAAAAAGTTGGGCAAAGCCTTTCTAAATGTTGACGTGACCGATCTGCGATGCAAGCTTTGCTTCACGGCCATAGACAACTTTGAGGATTTGATAGTGCATTTGAAAGACGATCACCAGCAACCGATTAGATCCGACGCGCAGTTCGGCGTGCTCCCGTTCAAATTGAACGACGGATCCGTGTGGCAGTGTGCCGTGTGCACGAACAGGTTCAAAGATTTCTCATCTCTGAAGAAACACACCCAAAGTCACTTTCAGAATTACGTTTGCGATACGTGCGGCGAGGGGTTCATTACGGAGTCCGCCATGATTGCCCACACTAGGGTGCCCCACGAGAACAAGTACAGCTGTAGTAGATGCGTTGCGACTTTCACGACGCTCGAGGAGCGGAACGCCCACATGAAAACTCAGCACACGTTAGCGCCGTACGTCTGCGGTTACTGCAAGGACAAACCTCGCTTCTCGAACTGGGAATCGAGGAAGAAACACCTGTTGGAGGTGCACAATTACAACACTGGCGGGGACACGTACGATTGTACCGTTTGCCAGAAATCGTTCAAATCccgctcggggaagtacaatCACATGGCGCGAATCCATCGCGTCATAAAGGAGTCCGAGCTCAGTTACGCGTGCGCCAGTTGTTCCAGAGGTTTCACCAGCCAGTTGTTCTTGGACAAACACGTCGCGAAGAAACACAGCGATGGATGA
- Protein Sequence
- MFDNLPRTAEEIRVNSKSKAKRNAEVLLEHSTMYPFRLRGKLMLCVFCGEEYAEPAAYRRHMNEMHKSFTMSTAFAHCGRGKEWLKVDCTDLRCKLCNASADTLEEIAAHLNDNHPNRNLDVNHDIALHPYRMDTDRWHCYICPMKFPSITRLSRHTTSHYLKFTCESCGRKYLSNDALKCHIRSFHAANPICRKCKMEFSSLEERKEHMRTSKLCWTFRCMECGERFMSWEYKQKHLEEAHGKQKATYTCPECGEAFKERKSCYTHFKMNHTDDSFVCTCCGRKFAFWRDLENHRVVHTGSTLEIRRSDTEPKPKIVLVYQTPQRRNAELILKNSTAYPFRTRFSQILCAYCHTEYDTLTELRFHMASDHVVADFRNVFYRTKGNLIKIDISVLECKLCSKSIRDIDTLMRHFAHEHGLPVKFNARFGVLPFKLTADGEWICVYCDKTHSGFVEFKRHIGHHFMNYDCDKCGTTFISDHALREHHRQVKCYRTAYKARNGRALRPRSNAEIILQCSSAYPFRTWMSNLNCVFCRVKTRDPVVFRNHMASHHETYDVRSAFYKKLGKAFLNVDVTDLRCKLCFTAIDNFEDLIVHLKDDHQQPIRSDAQFGVLPFKLNDGSVWQCAVCTNRFKDFSSLKKHTQSHFQNYVCDTCGEGFITESAMIAHTRVPHENKYSCSRCVATFTTLEERNAHMKTQHTLAPYVCGYCKDKPRFSNWESRKKHLLEVHNYNTGGDTYDCTVCQKSFKSRSGKYNHMARIHRVIKESELSYACASCSRGFTSQLFLDKHVAKKHSDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -