Bbre012560.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010002969.1:70829-76149[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.21 14 6.6 1.4 1 23 127 150 127 150 0.93 2 18 0.069 4.4 8.1 0.1 2 23 177 199 176 199 0.95 3 18 0.64 41 5.1 6.5 2 23 222 243 221 243 0.96 4 18 0.22 14 6.5 2.2 1 23 247 269 247 269 0.91 5 18 0.00011 0.0069 16.9 1.7 1 23 274 297 274 297 0.96 6 18 0.7 44 5.0 9.8 1 23 303 326 303 326 0.97 7 18 0.014 0.91 10.3 0.8 2 23 334 356 333 356 0.96 8 18 0.0038 0.24 12.1 3.2 1 23 362 384 362 384 0.96 9 18 0.0011 0.071 13.7 2.7 1 23 390 413 390 413 0.97 10 18 0.00079 0.05 14.2 0.3 3 23 485 506 483 506 0.91 11 18 3.3 2.1e+02 2.8 0.0 2 23 532 554 531 554 0.92 12 18 0.071 4.5 8.1 0.1 2 23 577 598 576 598 0.97 13 18 4.5e-06 0.00029 21.3 0.2 1 23 602 624 602 624 0.98 14 18 0.0059 0.38 11.5 4.6 1 23 629 652 629 652 0.95 15 18 0.00047 0.03 14.9 1.4 2 23 690 712 689 712 0.95 16 18 0.001 0.064 13.9 5.4 1 23 718 740 718 740 0.96 17 18 5.6e-06 0.00036 21.0 1.4 1 23 746 768 746 768 0.98 18 18 9.3e-05 0.0059 17.1 4.3 1 23 774 797 774 797 0.98
Sequence Information
- Coding Sequence
- ATGAAGGGAGTGTTTCAAGCAGCACATTTATTTCTGCTTCgagcggctggtagagactggatgagtGTAGTCGATGTGGTCATTGGTGCACCTTGGGAAGgtTTACTGCGTATCAAAATCATAAAACAAGAAAGTGAATTTGAAGATAACAAGAAAGGAGAAAATGCAAAGGAAATGGAACTTGAAGATATAAAAGCAGGAAAAATTGCAAGAAAGAATGGGAAGGCAAGGGCAAAGGATGATGTTTCAGAAGAAAATTCGGAAACACTTGACGAATCTGGAAATAAACAACGTGAATTGGAGAAACACCGTACGAACGCGCGAGAGATATTACTGTGGTCAAATGCCACTCCTATACGTAGCTGGAGGAGTATGGGTTACGCGTGCTGTTTCTGCGATGATCAATTTCAAGATCCAACCGCTTTGAAGAAGCATACCTTAGAATCGCACGATACCTCCTCCATATCCACATTTATGCGCAAAATGGAAATGCACGGGTATTACGTTAAACTGGATATAACCGGACTTATTTGCAAGATATGCGACACAGCAGCGGATACTTTAGAACAAATGATGGAACACCTCAAGAAGGaacacaacaaaaatataaatactatcaTCAACAATCATATAATGCCGTTCAAATTCGACGGCGAAATTCTCCGTTGCTGCATTTGCTTCCACGTGTTCCACAAGTTCCAAGCTCTACAGGTGCATATGAACAATCACTATAGGAATTACATTTGCAAAGTGTGCGACGCGGGATTTATGAATAAACACATGTTGCGCTGCCACGAGAACGGGCACAAGATCGGCACCTTCGAATGTTTACACTGCGGGAAAATATTCAAAACGTCGCGAGTGCTTAAACTCCACGAGCGGAATGTACACTGCACCAAATTCGCCCACAAATGCTGCTACTGCAACGAGAGATTCAAAGATAATCGATGTAAGAACGAGCATTTGAAGCGGGTGCACGGCAAAGGCGATCCCCTAGTCAAATGTCAGGCATGCGATAGGACTTTCGACAATCAGCGGAAGTGGTCTTTGCACGTGAAGAGGGATCATTTGATGCAGAGACAGCACAAGTGCAGTCGGTGCGAGAGGGCGTTCTTCTCCAAACGGCAGTTAACAGACCACGTGGTCAGACACACTAGGTTGAAGGAGCATAGATGCGAGTTGTGCTTGAAAATGTACGGCAGGTTAAAAACTTTGAAGGACCATATGCGGCGGCTACATCCGGACAGCAGGTATAAAATTCGCCATTGTGGGGTGAGAATAATCCGAATCGAAAAGAGACGAAAATCGGTGGAGTTGAAGTTTGTGTCAAAGAATAAACGCAATGGTAGCCCGGGGCTGTCGGAGGCGAAGAAAAACCACCACAATCTCAGCGTGATCCTTCTAAACTCAAACGCAAATCCAATCAGATGCAAAGACAGCCTCGGCTACGGATGTGCCTTTTGCCCTAAACAATTCCCCCAACCGACGAATCTGAAAAAGCATTTTCTCGAAGAACACAACAATGATAAACTCATTAAGTACATGTCGGACCACGTTTTCGAAAACGTCGTGAAACTGGACATCACTTACTTGAGTTGCGCTCTGTGCGATTTGGAAATCGCCCCGCTGGaggattttataaaacatttaaagaacAGCCACGGTAAACAACTCCACACTGAGATCAAGAGTCAAATACTGCCCTTCAGATTTGACACGCCCGAACTGCGCTGCGCCATTTGTACGGTGGAGTATGCCTCGTTCAAAGTCTTACAAGAGCACATGACGACCCACTTCGGAAACTATGCGTGCGAAATATGCGGAAGGAGTTACGTCACGGAGCGTCTCCTCCAAAGCCACATCAAACGGCACGGCGATGGAGATCACAAATGCGCGCACTGTGATAAAATGTTCGACAGCAAACAGAAGATGAGAGATCACGAGCTGAGAATGCATCTCGGCTTCAACAAGAGGAACAAGTGTCAATTCTGCGAGGAGAGATTCCTTGATTATTGGAAGAAAATGGACCACATGGTTAAAACGCACGGCGCGCCGCCAGTGATACTCAAATGTCAAGCGTGCGAGAGGTCTTTTAACAATAGGAGGGCGTTGACGCGCCACGAGAAGAAggatcatctgatggaaagacGACACAATTGTACTGAGTGCGATATGAAATTCTTCAGTAGCGGATGCTTGAGGAAACACATGGCGAAGCACACGGGATTGAGGCAGTTCACATGCGACGTATGCCGCAAATCGTACGGCAGGAAGAACACTTTGAGGGAGCATATGCGCATCCATGCCGACGACAGGAGATTTAAGTGCGAACACTGCGGGCAGGCGTTTGTTCAGAAGTGCAGCTGGCGTGGTCATATGCGCTCAAAACACGAGGAATATGTATAG
- Protein Sequence
- MKGVFQAAHLFLLRAAGRDWMSVVDVVIGAPWEGLLRIKIIKQESEFEDNKKGENAKEMELEDIKAGKIARKNGKARAKDDVSEENSETLDESGNKQRELEKHRTNAREILLWSNATPIRSWRSMGYACCFCDDQFQDPTALKKHTLESHDTSSISTFMRKMEMHGYYVKLDITGLICKICDTAADTLEQMMEHLKKEHNKNINTIINNHIMPFKFDGEILRCCICFHVFHKFQALQVHMNNHYRNYICKVCDAGFMNKHMLRCHENGHKIGTFECLHCGKIFKTSRVLKLHERNVHCTKFAHKCCYCNERFKDNRCKNEHLKRVHGKGDPLVKCQACDRTFDNQRKWSLHVKRDHLMQRQHKCSRCERAFFSKRQLTDHVVRHTRLKEHRCELCLKMYGRLKTLKDHMRRLHPDSRYKIRHCGVRIIRIEKRRKSVELKFVSKNKRNGSPGLSEAKKNHHNLSVILLNSNANPIRCKDSLGYGCAFCPKQFPQPTNLKKHFLEEHNNDKLIKYMSDHVFENVVKLDITYLSCALCDLEIAPLEDFIKHLKNSHGKQLHTEIKSQILPFRFDTPELRCAICTVEYASFKVLQEHMTTHFGNYACEICGRSYVTERLLQSHIKRHGDGDHKCAHCDKMFDSKQKMRDHELRMHLGFNKRNKCQFCEERFLDYWKKMDHMVKTHGAPPVILKCQACERSFNNRRALTRHEKKDHLMERRHNCTECDMKFFSSGCLRKHMAKHTGLRQFTCDVCRKSYGRKNTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRSKHEEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -