Bbre003087.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010000713.1:175723-179183[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.002 0.13 13.0 4.8 1 23 138 161 138 161 0.97 2 17 0.00015 0.0093 16.5 0.9 1 23 170 193 170 193 0.96 3 17 0.028 1.8 9.4 0.8 2 23 206 228 206 228 0.97 4 17 0.0097 0.62 10.8 1.3 1 23 237 260 237 260 0.95 5 17 4.7e-05 0.003 18.1 1.4 1 23 272 295 272 295 0.96 6 17 4.2e-05 0.0027 18.2 0.8 2 23 325 347 324 347 0.97 7 17 0.00036 0.023 15.3 1.3 2 23 357 379 356 379 0.96 8 17 0.031 2 9.2 0.5 2 19 384 401 383 404 0.92 9 17 3.2e-05 0.002 18.6 0.3 2 23 409 431 409 431 0.97 10 17 0.00086 0.055 14.1 3.0 2 23 440 462 439 462 0.96 11 17 0.00024 0.015 15.9 3.3 1 23 467 490 467 490 0.92 12 17 0.00067 0.042 14.5 1.0 2 23 502 524 501 524 0.95 13 17 0.0041 0.26 12.0 1.3 1 23 547 570 547 570 0.94 14 17 0.0018 0.12 13.1 0.6 2 23 602 623 601 623 0.97 15 17 6.4 4.1e+02 1.9 2.7 3 23 631 653 629 653 0.92 16 17 0.02 1.3 9.8 0.2 1 23 689 711 689 711 0.97 17 17 0.6 38 5.2 2.8 1 23 717 740 717 740 0.96
Sequence Information
- Coding Sequence
- atgttggaGCAAGAGAATGCCGAAGACTTGTCAGTCAAAAGGAAAGATCCAACATCTTATTTACCTGAAGAGCCAATGACATATGAATTTAAAgttaagaagaaaaagaaaaaaaagaaacacaagCAAGAAGATCCATTCAAAGACCTAGAAAAGAATGAGTTTCAGCCTACGGAGGCAGTGTTTGATCCTGAAGTGACTATAAAGGTTGAGAATATTGAGGTGGAGATAGATTTTAATGAAtttGCCAACAATAATGGGCTTATGCTAGAAGGTCAACAAAGCGAAGAAAGTCAAGAGCCAGCTGTGAAAATAGAAACACAGAACCATGAAGCTGtcattttaacatttgaaaGTGTAGTTAATGAAAAATCAATCGTTGGGTATGGTCAGGGAAGTCCACCATCCAATCATGTCTGTAAAATATGTCATCTAATCTTTCAGACCCCTAGGACATTGAGAATGCATCAGAAAAGGAAACATAAGATATTTAGACGATCCTTCAAGCACATATGTGATTATTGTGGAATGTCCTACGAAatgaaaaatagtttaattgcTCATATAAAGAGGAAACATGGGCCAAATTCAAAACCTGATGATAGAGAAGAGAGAACATGTGATGTTTGCGCTCTAGTATTTAAAGGCATGACGAGATTAAGAATGCATATGCGACGGAAACATGGCTCATTTGAGGAGTCTTTCAGACATGCCTGTCAACAGTGTGGTCTCACATATGATAAATATAGAAGTTTGATTGTCCACGTTCAGAGGAAGCATTCTTTAAAACCTAAACCTGTGGTGGACCAGTGGTTTAACTGTCCTTTTTGCCCCAAAGTTTTCACTAAACGGGAGACATATGCAAGACATGTTCAAAGGAAACACCGTATTAGCGATGAGGAGAATATCAAACAGGAGATGGAGAGCATGGAACTATTGAAGAGTTGTAAAAATGAAGAAACTGGTGAAATAACTTGCAAGGAATGCCCACTGGTGTTTTCTTCCCTGAACTTTTTAAAGTTGCACATGAGAAGAAAACATAACGCTTTGAAAGAAGATTTTAGACTTAAATGCAGAATTTGCAACCTTTCATATGATAAAATCGAAAGTTTGAAAAGGCATATAAGGAGAAAGCATGATAAGGGATCCTATTGTGAGGTGTGTAACAAACAATTTGATACGAGGGAATTGTATTTGAATCACTCACACATCAAAGTGATCAGAGAGTGTCCTATTTGCGGGTTAATTTTCTCATCACAAGGTGGATTGGGGAAACACCTACGGTCCTGTCACAAAGTTGATACTCCGAAAACGGTTGTCTGCAATATGTGTACTGAGTCATTCCACAATAAGAGGCAGCTAAAGCTGCATCGTATGAGGATGCATTTAAAAGTGTCATACACATGCCGATTTTGCAAGAAAGTCTTCAGATCTAAAGAAGCGTTTCGACGTCATGTGATCTTCAAACATCCCGTTAAAAACGTATCTAGTGGTCAGATGCAAAAATGTGAACATTGTGACCTGGACTTTCCAGATGAGTTTGAATTGTGCCGTCATATAGACGTTGCCCATCGAAAAACGTTCGAGGACCCACATTTTGTTGATGTCAAGAAAGAGGAGGCAGACATTAAAGAGTCCTATCAATGTTCAAAGTGCACAGACACATACACAACCTGGAACGAGCTCCGATTGCACTACGAACAGAACCACCAAACGAAAGAGGAGACCCAGTGTCAGATGTGTGGTGAAATAATGCCAGTGCACGAATTGCAAAAGCACATCAAAAATACGCACACGTTAATACAATGTAAATACTGTGAATTTAAAACGGCGGTTAGAGCGAGTTTAACTCAGCATATGTTGAGGCATAAGAATGCCACAACGTTGAATTGTAATTTTGAAGGGTGCAAATACAAAACTTTTCACGAAGACGCCATGTTGAAGCACAAACAGAAACATTTGGACCAAGGGGTCAAACTCCAGTGCACGCAGTGTCCCTTCCAgacaatgaataaatatattttaaagtatcacGAGGAAGCACATGCGACTggcaaaaagaaatatacttgTGATCAGTGTGATTATGCAACGGTGTTGCCAGCCAGTCTAGTTCaacacaaatataaacattCATCAGAAAAGAGGTTCAAATGTGAAGTGTGCTCTTTCGCGACAAAGTACAACACTTCTTTACGGTTTCATGTGAAGAAGAAACATTGTGATCTCCCATCTAACATTTAG
- Protein Sequence
- MLEQENAEDLSVKRKDPTSYLPEEPMTYEFKVKKKKKKKKHKQEDPFKDLEKNEFQPTEAVFDPEVTIKVENIEVEIDFNEFANNNGLMLEGQQSEESQEPAVKIETQNHEAVILTFESVVNEKSIVGYGQGSPPSNHVCKICHLIFQTPRTLRMHQKRKHKIFRRSFKHICDYCGMSYEMKNSLIAHIKRKHGPNSKPDDREERTCDVCALVFKGMTRLRMHMRRKHGSFEESFRHACQQCGLTYDKYRSLIVHVQRKHSLKPKPVVDQWFNCPFCPKVFTKRETYARHVQRKHRISDEENIKQEMESMELLKSCKNEETGEITCKECPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCEVCNKQFDTRELYLNHSHIKVIRECPICGLIFSSQGGLGKHLRSCHKVDTPKTVVCNMCTESFHNKRQLKLHRMRMHLKVSYTCRFCKKVFRSKEAFRRHVIFKHPVKNVSSGQMQKCEHCDLDFPDEFELCRHIDVAHRKTFEDPHFVDVKKEEADIKESYQCSKCTDTYTTWNELRLHYEQNHQTKEETQCQMCGEIMPVHELQKHIKNTHTLIQCKYCEFKTAVRASLTQHMLRHKNATTLNCNFEGCKYKTFHEDAMLKHKQKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHATGKKKYTCDQCDYATVLPASLVQHKYKHSSEKRFKCEVCSFATKYNTSLRFHVKKKHCDLPSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -