Bbre007668.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010001757.1:1-24826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.026 1.6 9.5 0.2 1 23 527 549 527 549 0.96 2 11 3.2e-05 0.002 18.6 2.3 1 23 560 582 560 582 0.98 3 11 5.4e-05 0.0034 17.9 3.2 1 23 588 610 588 610 0.99 4 11 1.8e-05 0.0012 19.4 2.4 1 23 617 639 617 639 0.99 5 11 3.6e-05 0.0023 18.5 0.5 1 23 645 667 645 667 0.92 6 11 2.3e-05 0.0015 19.0 0.0 1 23 673 695 673 695 0.98 7 11 1.3e-06 8.3e-05 23.0 1.7 1 23 701 724 701 724 0.96 8 11 0.00046 0.029 15.0 1.8 1 23 730 753 730 753 0.95 9 11 0.00018 0.011 16.3 0.8 2 23 760 781 759 781 0.97 10 11 1.9e-05 0.0012 19.3 1.0 1 23 787 809 787 809 0.97 11 11 0.0025 0.16 12.6 0.4 1 23 815 839 815 839 0.94
Sequence Information
- Coding Sequence
- ACAAATTTACAATCAGGTAAACAGTTAGTAGATGTTTTAAGTGAAATTGTAGATAAACATGTGAAGGAGGATGGGATACATTCGAAAATAATCTGCAAGAAGTGTCATATAAATTGTGTGGAGTATGATGCTTTGCATGTGAGattaaaagtcataaaaatgGATATGCTCGATCAGTTCAAGAAAACTTTGCCTCGACATAATCTGAACTATGATACATACAACAAAGAACCTATtgcaaaaagtattttgttaccACCCACGGCGTCTACCCAAAAGAAGTTCGAAGGAAAGAAGATTGTATTATCAGCTTCTAAACTTCAACCACTACCTccaaattttgttattaagacCGATAAGTGGCCATTAACATCGAAGCTGAATACAAGTGCACAGTCCAAAATCAATCCGGTAGTGTCAACTGTATCACCTTCGACGTTAAATCTCAAAGTGACAGTGGGTTCCTCTGTCCTAACTCAGAGCATTAAAACGACAGGCTCCGGCGCTAATAAAGTTGTGCAGAAAGTAATAATCAATTTACAAAATCAAACTGTCAACTCCACTCCCCGTGCTGATTTAAGCGTATCACCATCGAAGACCGAAATGAAACCTATTACTTCGAGTACGGAAGCGTGCAGTGATAAGTTAACAACCTCGACACCAGTGACTTCAACTTTGAGCAGTAAATCGGCAAACTCAGTTTTGAGCTATAACACTGATTCGCTGCCGAAAGATTTCCTATCATCTGCTCTATTAACTAAGATAAGTGATGGCGTTGATGGTGATTTTGGAGATGTTAAGGTCAAAAAGGAAGTTCAGATTACACCTAACGAAGTGGAAAATAAAGATGAACAGGAGATGGATATTGATGAAGATTGCTCGTTGGCTGTGATAACAGCTTGCGATACGAAGAACAAACGATGTGGTGACATTGAAGAGAAGAGCGAGAAAGATCAAAAATCAATGAATTACTTCGATGTTAATTTACTACCGAGCCTGGAAGCAACGAGTAACGATAGTCAAGACATGGCAGAGCAGAACCAGTATGTATTTGGAAAAGTGGAGTTATTGCAGGAGAGCGAAGACGATGAAGATGAGGATACAATAGTCATGGATGAAGAGAGTGGTTCCATCATACAGGTGGTGTCGGGCCAGAAGTTCTTGTATGGTGACAGTGAGATATCCCTAGTCCCTATCCCCGAAGGAGATAATTTGAATGCGAATGAAAATGGAGACAGTCAAGAGTCCAACGAGGATTCTCAAATCGAGCTGCAGGTATCTGGCGATGAGGAGACTGCCAACGCCATTATCGCCGCCGCTCAGGAACAAgGTGGTGCCATCATAAAAGTGGAGTCCGGTGAAATGTTCCGAGTGAAGTCTGTTCACAGCAAATCCGAAAACGGCGATGATGAAGATGAGGACAAGATTAATTTTGAAGCGCAGATGATCGTGACAAAAGAGGGCAATAAGTTCAAATGCGTAATGTGCGAAAATAATGGCAATAAGGAAGGAGCCATAGTGACTGGTGATGCTACGATCATGATGGACCACCTCCGCACCGTGCACGACGCTCGCCTCCATATCTGTGGCGTGTGCGGGGTGGTGATGAGGAAGCGGGCCGAATACACCGCGCACATGGAAAAGCACATGCAGGCAAATTCGGACAAAAATAAAGTTCACGAATGTACCGTCTGCAAGAAGAAATATAGCTCCAAAACTCTGTTGGCGGAACACATGAACATGCACAACGGAGTGCGGCCGTACACCTGTGAGATCTGCGGGAAGTCCTTCGCCTCTAAATACACGCACCAGTCGCATCTGAAGACGCATCTGGTGAGACCCCGCCCCTTCAAATGCAGCCAATGCGGCAAGTCGTTCCTCACGCAGCAAAACCTGAACCAGCACGAGAAAACCCATTCCGGCGTTAAGAACTTCTTCTGTAAAATATGCGACAAGGCGTTCGGCACGCAGCACAACTTGGAGGTTCATGGCGTCGTTCACTCCGGCAACAGGCCGTTCGTTTGCGGCGCGTGCGGGAAGGCTTTCGCTCGCAGGGCTGAGGTTCGCGACCACATGAGGATACACACCGGGGAGCGGCCGTTCACGTGCGACATATGCGGCGCCAGTTTCTCGCAGCGCTCGAACCTTCACTCGCACCGGCGCGCCACGCACCTCGACGACAAGCGCTACCGCTGCCAGCTGTGCCCCAAGCGGTTCAAACGGCGCAGGTTACTGGACTACCACGTAAAGGCGACGCACACTGGCGAACGTCCGCTCCAGTGCGAGGTTTGCCGAGCCACGTTCGTGTATCCCGAGCACTATAAGAAGCACGTCAGGATACACAGCGGGGAGAAACCCTACGTGTGCGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTCGTGTGCGGCGCGGGCTACATGCGCAAGCAGCTGCTCTACCACCACATGAACACCAACGGTCATCTCGCAGAGTCAATAGTAGTAAACCAGGCGAGAGTCACGAAGGTTGCTGACAACGTGATAACAAACACCACGCCCGTGGTGTTGGATGCCGTCAGCTTGAAGGGTGAAACCGTGTCCAACATATTTGGAACCGGGGAAACCCTGCAACTGGAGTCGGCAGACACTTCAGTCGTTGCAGATGGCGGCGCTAAGCTCTACATAGCAGAAGACAAGATAGTCCCACAAGATGGTAAATCAGCGATAAGTATATCGCTGAACGACGAGGAGGCTTCCTTGTTGACTTTACaCAACATAGAAGACCTAAAAGCGGAGGGCGCAATATTGAGTGACGTCACGGAGCAGTTAGGGGAGGAAACGCAGGTGTCGACTAGCGAGGGGGGTGTGGCCGCGAGTGGAGGCGTGGTTCGTCTGGTGCAGGTCCAGCTTCCGGACGGAAGAAGCGGCTGGCTTGCAGTCGACTCTTAG
- Protein Sequence
- TNLQSGKQLVDVLSEIVDKHVKEDGIHSKIICKKCHINCVEYDALHVRLKVIKMDMLDQFKKTLPRHNLNYDTYNKEPIAKSILLPPTASTQKKFEGKKIVLSASKLQPLPPNFVIKTDKWPLTSKLNTSAQSKINPVVSTVSPSTLNLKVTVGSSVLTQSIKTTGSGANKVVQKVIINLQNQTVNSTPRADLSVSPSKTEMKPITSSTEACSDKLTTSTPVTSTLSSKSANSVLSYNTDSLPKDFLSSALLTKISDGVDGDFGDVKVKKEVQITPNEVENKDEQEMDIDEDCSLAVITACDTKNKRCGDIEEKSEKDQKSMNYFDVNLLPSLEATSNDSQDMAEQNQYVFGKVELLQESEDDEDEDTIVMDEESGSIIQVVSGQKFLYGDSEISLVPIPEGDNLNANENGDSQESNEDSQIELQVSGDEETANAIIAAAQEQGGAIIKVESGEMFRVKSVHSKSENGDDEDEDKINFEAQMIVTKEGNKFKCVMCENNGNKEGAIVTGDATIMMDHLRTVHDARLHICGVCGVVMRKRAEYTAHMEKHMQANSDKNKVHECTVCKKKYSSKTLLAEHMNMHNGVRPYTCEICGKSFASKYTHQSHLKTHLVRPRPFKCSQCGKSFLTQQNLNQHEKTHSGVKNFFCKICDKAFGTQHNLEVHGVVHSGNRPFVCGACGKAFARRAEVRDHMRIHTGERPFTCDICGASFSQRSNLHSHRRATHLDDKRYRCQLCPKRFKRRRLLDYHVKATHTGERPLQCEVCRATFVYPEHYKKHVRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECVVCGAGYMRKQLLYHHMNTNGHLAESIVVNQARVTKVADNVITNTTPVVLDAVSLKGETVSNIFGTGETLQLESADTSVVADGGAKLYIAEDKIVPQDGKSAISISLNDEEASLLTLHNIEDLKAEGAILSDVTEQLGEETQVSTSEGGVAASGGVVRLVQVQLPDGRSGWLAVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -