Basic Information

Insect: Baronia brevicornis
Gene Symbol: -
Assembly: GCA_031353405.1
Location: JASFAT010000047.1:4858-18201[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5e-05 0.0035 17.9 0.6 1 23 115 138 115 138 0.96

2 12 0.038 2.4 8.9 6.0 2 23 146 167 145 167 0.92

3 12 1.6e-05 0.001 19.6 1.4 2 23 174 195 173 195 0.97

4 12 5.1e-06 0.00032 21.1 0.3 1 23 201 223 201 223 0.97

5 12 4.8e-05 0.0031 18.0 0.2 1 23 232 254 232 254 0.93

6 12 0.00016 0.0099 16.4 0.4 2 23 261 282 260 282 0.94

7 12 0.00024 0.015 15.9 7.2 1 23 288 310 288 310 0.97

8 12 1.1e-06 7.3e-05 23.2 0.4 1 23 316 338 316 338 0.98

9 12 1.3e-06 8.3e-05 23.0 2.1 1 23 344 366 344 366 0.99

10 12 0.0023 0.15 12.8 1.1 1 23 372 393 372 393 0.91

11 12 0.022 1.4 9.7 6.6 1 23 399 421 399 421 0.94

12 12 0.00076 0.048 14.3 1.7 1 23 427 449 427 449 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5e-05	0.0035	17.9	0.6	1	23	115	138	115	138	0.96
2	12	0.038	2.4	8.9	6.0	2	23	146	167	145	167	0.92
3	12	1.6e-05	0.001	19.6	1.4	2	23	174	195	173	195	0.97
4	12	5.1e-06	0.00032	21.1	0.3	1	23	201	223	201	223	0.97
5	12	4.8e-05	0.0031	18.0	0.2	1	23	232	254	232	254	0.93
6	12	0.00016	0.0099	16.4	0.4	2	23	261	282	260	282	0.94
7	12	0.00024	0.015	15.9	7.2	1	23	288	310	288	310	0.97
8	12	1.1e-06	7.3e-05	23.2	0.4	1	23	316	338	316	338	0.98
9	12	1.3e-06	8.3e-05	23.0	2.1	1	23	344	366	344	366	0.99
10	12	0.0023	0.15	12.8	1.1	1	23	372	393	372	393	0.91
11	12	0.022	1.4	9.7	6.6	1	23	399	421	399	421	0.94
12	12	0.00076	0.048	14.3	1.7	1	23	427	449	427	449	0.97

Sequence Information

Coding Sequence: ATGGAAAAAAGGAATGTTCATGGTAGTGTGGAGGCAATTAAAGTTGAAGAACTAACACCCAATAATGAACGTGATATTAAAGCTTCGAAATATGCTTTAAAGGAAGAAAATATAGACATTACCAATTTAAAAGGAGAATATAGTGAACATGAAGatatacaGTATTTAGAAGACATTAACGAACTTGATGATGAATCCGAGAACATTGCCTTAAGTTTTATCCAAAGTGAAAAGCAACAAACAAAGGATAAATTAAAGATCACACTAACTGATTCATTGAGCCTTCTGAAAAAGTTGTCGTCCACCAAACATCATAATAACcaaaatgaaagaaagaaatcACATGAGTGTCCAATTTGTTTAaagaaattCCCGAAATCGAAATCGTTAAAAATTCACATTGCAAGTGACCACGGCGCcgttaaacatttaaaaaagtgCAATCACTGCAAAGAGTCCTTCAACTCGGAACACGATTTACATTTGCACTCGGCGCTACATGCGAAGAGCTCGGTGTGGACGTGTAACAAATGTCAAAAAGAATTCaaagCAAAGGGCATGCTGCGACGTCACATACAACGTCACATGGAGACGAAGCCACACTCATGCCCGAGTTGTGGGAAGGCGTTCGCGGAGCTGTACGCACTACGCCGACACGTGCGCGTGCATACGGGCGAGGTGCTTGAGAAAAAATTTGCCTGTACCCAATGCGATAAGAAATATAGTACGAGCAGCATGCTAGCGGCGCACGCAAGTGCGCACAGCGGCGAAAGGCCTTGCGTATGCGCTGCATGCGGCAAGGCATTCTCCACGCAACGCCTCCTCGCGTCGCACCGCCTCGTACACTCCGAGCATAAGCCTTTCGCTTGCCAGTACTGCGACAAGAGCTTCCGGCACGAATCGACAAGGAACACCCATCACCGCACACACACTGGGGAGAAGCCCTACATTTGTTCGTCGTGTGGCAAGAAGTTCATCCAAGGCTCCAATCTCGTGCTGCACATGCGCACTCATACAGGTGAGAAACCGTACTCGTGCAAGGTATGCGAACGGCGGTTTTCATCGGGATCGTCGCTAAAGAACCATCAACGCACCCACACCGGGGACAAACCATACGCCTGTCATGTTTGTGGGAAGAGGTTCGCGCGCATGGATATGCGAATTCACATGATGCAGCATACAGGTGAACGATCGCACGCGTGCACTGTCTGCCATAAGAAGTTCTCCAACGCTTGGCGGTTACGAACACACTGCCGAATCCACACTGGTGAAAAGCCATATGAATGTGCTACTTGTTCGGATAAATTTGCAACAAAATCTCATCTGATGAAACACGTGAAAGGACATcagaaaacaaagaaattcgAAAAAAGAGAGGTACTCATAGTCCGGCAACTAGATCTAACTGAACAACCATATATTGTTGCCAGCAAGATTGTATTCCCTGACGATAAACACGCAACTTCAACAGAACATGAAGTAACAACTACAAAATGTGATAGTGATAAAGATATCAACATGGATCTTACACAGGATATGCCGTTAGAAGTGATATTACAGGACGACAGTGACATGAAAAGTGACTTCCTTGTGCAAAGTGATGGTCATTATCAAAATGGTAACATTTGCTTGAATGAAGGTGTTCATTTCGTCGACGGTATGAACGATACCAATGTGAATTACGTGACTGTTAGCGAAAGCGACGTCAGTTCGTCTTCGATGATAGAAGGTACTACTGTTAAACTCTACCATTTGGATCAGCGTGTAGTTCAAATTGTACGTTCCGGTCGGCAGTTGACTATCAGCAAAGTAACTAGtgaataa
Protein Sequence: MEKRNVHGSVEAIKVEELTPNNERDIKASKYALKEENIDITNLKGEYSEHEDIQYLEDINELDDESENIALSFIQSEKQQTKDKLKITLTDSLSLLKKLSSTKHHNNQNERKKSHECPICLKKFPKSKSLKIHIASDHGAVKHLKKCNHCKESFNSEHDLHLHSALHAKSSVWTCNKCQKEFKAKGMLRRHIQRHMETKPHSCPSCGKAFAELYALRRHVRVHTGEVLEKKFACTQCDKKYSTSSMLAAHASAHSGERPCVCAACGKAFSTQRLLASHRLVHSEHKPFACQYCDKSFRHESTRNTHHRTHTGEKPYICSSCGKKFIQGSNLVLHMRTHTGEKPYSCKVCERRFSSGSSLKNHQRTHTGDKPYACHVCGKRFARMDMRIHMMQHTGERSHACTVCHKKFSNAWRLRTHCRIHTGEKPYECATCSDKFATKSHLMKHVKGHQKTKKFEKREVLIVRQLDLTEQPYIVASKIVFPDDKHATSTEHEVTTTKCDSDKDINMDLTQDMPLEVILQDDSDMKSDFLVQSDGHYQNGNICLNEGVHFVDGMNDTNVNYVTVSESDVSSSSMIEGTTVKLYHLDQRVVQIVRSGRQLTISKVTSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -