Basic Information

Insect: Baronia brevicornis
Gene Symbol: -
Assembly: GCA_031353405.1
Location: JASFAT010004490.1:188594-203377[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.8 4.3e+02 1.9 2.0 5 23 109 128 107 128 0.93

2 11 0.00054 0.034 14.8 0.2 1 23 154 177 154 177 0.96

3 11 1.1e-06 6.8e-05 23.2 2.2 1 23 183 205 183 205 0.98

4 11 1.4e-06 8.8e-05 22.9 1.1 1 23 211 233 211 233 0.98

5 11 4.9e-07 3.1e-05 24.3 6.4 1 23 239 261 239 261 0.99

6 11 4e-06 0.00025 21.5 4.4 1 23 267 289 267 289 0.98

7 11 0.00039 0.025 15.2 0.1 1 20 488 507 488 511 0.89

8 11 0.00017 0.011 16.3 5.5 1 23 517 539 517 539 0.99

9 11 1.2e-06 7.5e-05 23.1 1.4 1 23 545 567 545 567 0.98

10 11 7e-07 4.4e-05 23.8 3.2 1 23 573 595 573 595 0.99

11 11 1.4e-07 9e-06 26.0 2.3 1 23 601 623 601 623 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.8	4.3e+02	1.9	2.0	5	23	109	128	107	128	0.93
2	11	0.00054	0.034	14.8	0.2	1	23	154	177	154	177	0.96
3	11	1.1e-06	6.8e-05	23.2	2.2	1	23	183	205	183	205	0.98
4	11	1.4e-06	8.8e-05	22.9	1.1	1	23	211	233	211	233	0.98
5	11	4.9e-07	3.1e-05	24.3	6.4	1	23	239	261	239	261	0.99
6	11	4e-06	0.00025	21.5	4.4	1	23	267	289	267	289	0.98
7	11	0.00039	0.025	15.2	0.1	1	20	488	507	488	511	0.89
8	11	0.00017	0.011	16.3	5.5	1	23	517	539	517	539	0.99
9	11	1.2e-06	7.5e-05	23.1	1.4	1	23	545	567	545	567	0.98
10	11	7e-07	4.4e-05	23.8	3.2	1	23	573	595	573	595	0.99
11	11	1.4e-07	9e-06	26.0	2.3	1	23	601	623	601	623	0.99

Sequence Information

Coding Sequence: ATGTCTAGCCGCAGTGGAAGGATGGTGAATGTAGTACCAATTCCTAAAATTAAGgTCAAATCGAAAGACAGCTCTGAGCAAGATAAGCGATTGGGACCCAAACAGACATTTCCTTCAATGAGTTCAGTGAATATCATGAGTTTGGCCTCTAAAGACgtaaattacattattctaaagTCTGAAGACGGATCGGAACCGCCGAGGAAGAAAAAGATGGAGAAAGAGAAGCTGGAGAAGCCAAAGACTGCTACAACTAGAAAAGAACCACAGCCCATTACTGGTCCGTTCGAATGCCTTCAACCTTCAAATCTAGTAGCAGATGGAATATGCCATCAGATCTTCTTTTCGTGCTGTGAATATTCCACTCACTACAGAGATGAGCATACGAGGCGACGCAAGGGCCTGAGGTGTCAAGTTTGCGAAAAATCTTTGTTGGCATTGGAGAACCAACAAATGCCGTATGTCTGTGAGgtgTGTGACACAGGCTTCCAGACAAACAAAGAGCTGTCCGATCACCGATCAATTTCTCACGTTAAACTGAAGCCGTTCGAATGTAACGTGTGCCACAAACGCTTCACTCAACAAGGTGGCGTGCAACAACATATGCGAATGCACACCGGAGACAGACCGTTCCCTTGCACGTTCTGCACCAAGTCCTTCACACAGAAATCCGGCCTAGATCAACACATACGCATCCATACTAAGGTGAAACCCTACAGATGTGTCATATGCAACAAAACCTTTTGTCAGTCCGTTCATCTCAAACAACATATGCGTACACACACAAACGTCTCTCCGTTTCAATGCGGAATATGTGAAAAGCGGTTTAAGCAAAGTAGCCATTTAAACTACCACCTCAAATACCACAATCCAGCGACAATGACAGAAGAGCAGAAGAACAGGTATGAGGAGCTAGTGGGACTTATAGGGAAAAGTGAGTTAGTTGAAGTGGAAGTTGACCAGAGTCAATCCGAGTTGTTGATTCAGACCCAAGTTGAAGTTGAAGAGgcAAAATTACCAGACAAAGATGAGAAAAAGAATAGATTAGAACAAGAAACTAGACCAACATCATCTTTGGCCGTCACTGGGAATATAATGAGTTTAGCATCAGAAGATGTTAGTTACATCATCATGAAGAAAGAGAATGGGCATGAGCCATTGAAGAAAAAGAAATCACTAAAACAAGAGAACCAGAAAACAGCAGATACTGAAAACATGGATAATTCAAGAACTGTTGaaaggaaagaaagaaagaagaaatgtACAGAACCAGAGACTATAACGGGTCCATTTGAATGTCTTCAGCCTTCAAATCTAGTGGCGGATGGATTATGTCATCAGATATTTTTCTCGTGCTGCGAATACTCCATACATTTCCGGGAAGAGCATAAGCGCCGACTAAAAAGTCTGAGATGTCAGGTGTGCGAGAAGCCATTACTGGGGCAAGATCAAGAACGACCTTATTTCTGCGATGAATGCGGCGCAAGTTTTCGAACAAGTGAAGAGCTGACGGGGCACAATGCCGCTGCACACGTAAAGTTGAAGCCTTACAAGTGCAGCGTGTGCGACAAACACTTCACGCAGCAGGGGGCGTGCAAACAACACATGCGTTTGCACACGGGCGATAGGCCGTTCCCATGCACCTTCTGCACCAAGTCATTCACGCAAAAGTCCGGTTTAATACAGCATCTACGACTTCACACAAAGGAGAAGCCCTTCAGGTGCGTTATCTGCAATAAATCCTTTTATCAATCTGTCCATCTCAAACTacacatacgcacacacacaaacgtGGCTCCGTACCAGTGTGGTATATGCAAGAGGCAATTCAAACAGAGCAGCAATTTAAACAACCACCTCAAAACTCACAATCCGGTGAAGGTTGTTGAAAAACAACAGAACATCACATACGACGAGGTCATGAAGTTTAGTGAAAGCAGTGAGTTGGTGGAGGTGGAAATCGACCAAAGTCAGTGCGAGTTGCTTATTCAGTCGCATGTTAGTGAAGAGGTGGAGAGCTAG
Protein Sequence: MSSRSGRMVNVVPIPKIKVKSKDSSEQDKRLGPKQTFPSMSSVNIMSLASKDVNYIILKSEDGSEPPRKKKMEKEKLEKPKTATTRKEPQPITGPFECLQPSNLVADGICHQIFFSCCEYSTHYRDEHTRRRKGLRCQVCEKSLLALENQQMPYVCEVCDTGFQTNKELSDHRSISHVKLKPFECNVCHKRFTQQGGVQQHMRMHTGDRPFPCTFCTKSFTQKSGLDQHIRIHTKVKPYRCVICNKTFCQSVHLKQHMRTHTNVSPFQCGICEKRFKQSSHLNYHLKYHNPATMTEEQKNRYEELVGLIGKSELVEVEVDQSQSELLIQTQVEVEEAKLPDKDEKKNRLEQETRPTSSLAVTGNIMSLASEDVSYIIMKKENGHEPLKKKKSLKQENQKTADTENMDNSRTVERKERKKKCTEPETITGPFECLQPSNLVADGLCHQIFFSCCEYSIHFREEHKRRLKSLRCQVCEKPLLGQDQERPYFCDECGASFRTSEELTGHNAAAHVKLKPYKCSVCDKHFTQQGACKQHMRLHTGDRPFPCTFCTKSFTQKSGLIQHLRLHTKEKPFRCVICNKSFYQSVHLKLHIRTHTNVAPYQCGICKRQFKQSSNLNNHLKTHNPVKVVEKQQNITYDEVMKFSESSELVEVEIDQSQCELLIQSHVSEEVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -