Bbre016697.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010004415.1:99433-108328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.00097 0.062 13.9 0.7 1 23 235 257 235 257 0.97 2 30 0.019 1.2 9.9 0.0 2 23 285 307 284 307 0.94 3 30 0.013 0.82 10.4 0.6 2 23 328 350 327 350 0.96 4 30 0.00043 0.027 15.1 0.2 2 23 356 378 355 378 0.94 5 30 0.13 8.1 7.3 1.7 1 23 382 405 382 405 0.93 6 30 0.011 0.7 10.6 2.0 2 23 408 430 407 430 0.95 7 30 0.0024 0.15 12.7 2.5 1 23 506 529 506 529 0.93 8 30 2.9 1.8e+02 3.0 0.1 2 23 557 579 556 579 0.91 9 30 0.00087 0.055 14.1 0.1 1 23 601 624 601 624 0.93 10 30 0.00011 0.0069 17.0 3.2 2 23 630 652 630 652 0.95 11 30 0.001 0.066 13.9 1.9 1 23 657 680 657 680 0.95 12 30 0.00025 0.016 15.8 0.6 3 23 687 708 686 708 0.97 13 30 0.0003 0.019 15.5 1.9 3 23 714 735 713 735 0.98 14 30 0.041 2.6 8.8 0.3 3 23 743 763 741 763 0.96 15 30 0.038 2.4 8.9 2.2 1 23 769 791 769 791 0.96 16 30 0.0016 0.099 13.3 4.0 1 23 833 855 833 855 0.96 17 30 0.5 32 5.4 0.1 2 23 883 905 882 905 0.91 18 30 0.038 2.4 8.9 0.5 2 23 926 948 925 948 0.95 19 30 0.0028 0.18 12.5 3.0 1 23 953 976 953 976 0.97 20 30 0.0009 0.057 14.1 2.0 1 23 981 1004 981 1004 0.95 21 30 0.04 2.6 8.9 3.4 2 21 1007 1026 1006 1029 0.94 22 30 0.14 9.2 7.1 4.3 2 20 1036 1054 1035 1056 0.94 23 30 0.13 8.3 7.2 0.8 2 23 1113 1135 1112 1135 0.92 24 30 0.44 28 5.6 0.0 3 23 1164 1185 1162 1185 0.94 25 30 0.0018 0.11 13.1 0.2 3 23 1238 1259 1237 1259 0.92 26 30 0.013 0.82 10.4 3.8 2 23 1264 1286 1263 1286 0.93 27 30 0.0003 0.019 15.5 2.6 1 23 1291 1314 1291 1314 0.97 28 30 1.6e-05 0.00099 19.6 5.0 1 23 1318 1341 1318 1341 0.97 29 30 0.0016 0.1 13.2 0.4 2 23 1348 1369 1347 1369 0.95 30 30 9.4e-05 0.006 17.1 0.9 1 23 1375 1397 1375 1397 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTTGATGAAATTGTGGTTAAAGAAAGCCCGGGTCTTTGCCGGTGCTGCCTCTCCGAAGGTTGTTACAAAGACCTGGGCACCGAATACACTTGGATGGACGATACAGAAGTTTATGCTGATATGTTATTGGAATGCTTTGATATTAGTataTCACAACACAATGAAGGTCCTAATGGTCCCAACAGACTCATTTGCGAAGTCTGTATCACTCGTCTCAGGGATGCATGCAATTTTAAAAAGCAAGTAATGGCTTCAGAGAAAAAGTTTGTTGATATGATCGGGAGAGGTGCTTTTAAACCTACAGTTGTGCTGTACCAAGGCCCGCTGAAGGTAGAGACGATTGTGGATGATCGACCTGCACAAATGCAGGCAGTGGAATATCTAGAGGATAATATAGACTTTGAAGATgATGAGATccttaaaaatgaaaacacagAGCAGACTGTATCAGAAGACATAACAGTTGAAACTCTACCAGTAAAAGGAAAGAAAGGCAGACCTAAAAAGAGTACAGTCGATGCAAGAATGCTGAAAAAGTCAAAAGTTACAAAATTAGAGGAGAAACCAAAAAGTTCAAAAGCACTTAAAGATAAAATGGCACCGACAAAGATGGCCAGTGCCAATAAGTTGAGGAGAATGAATCTTCAAATTCTGTTCAATAACACGTCGTTGATTCCTTTTAAATGGCGGAGGAAATACATGTGTTTTTACTGTGGGGAAGATTTACCGCGATACGATCAGTTGAAAAAGCATACAAAGGCACACGGTGCATGTTCGGATGCAGATAAAGCTATCAAATTAGTCAAATCTGGCGATGTTGAAGTTAAAATCGACGTATCTGATATATCTTGTGATTTGTGCGAGGAAAGTTTCTCATCTGTCGATAACATTATTGAGCATTTGATTTCcaaacacaaaatattgtaCGATAAAGGCGTGTCTTTAGAGCTAAAGGCGTATCGACTTGTAGATCTGAAATGTCTATTTTGCGACGAAAAATTCAACTTCCTCGACAAACTAATCGTCCATGTTAACAAGAGTCATTCGAATCAATGCTTACCGTGTGTTGAATGCAATcagagttttaataaaaagaggGATTTAGAAGCACATTGGAGAGCGTATCATAAAAAAGAGTATATTTGCTTGAAATgttcaattaattttcaatcttaTGCCGCGTTGCGAAAGCACAAATTGCATGAGCACCCCTCCACTTGTAATATTTGTTTCCAATATTTCTCATCCTCGAGCAAAAGGTTAAAGCATATGAAGGAAGAACACGCTTCCGCTGGTCTCCAATGTGGATTCTGCCATAAGATTATGTCCACAAAGCAGTGTTCCCTGCAACACGCTTCCAAGTGCAATCCAATGCATGATACGAAAATATCGAAAGAAACAATTGTTGTAGATAACGAAAAGAAATCGTCTGTTAAACAAATTAGAATCAATTTAGTTTGTATCATAAATATGTCTACAGCTATGCCATTTAAATACTATATGAGTAGGTTTAGATGTTTCTTCTGTCCAAAAGACTTCACGGAATGTGATGATCTAAAACGACATACTGTTATAGAACATCCTATATGTGATACAAAATTGAAATCAATGAAGCTAAGAAGTAGGGAAGACGGTCGCATAAAAATAGACGTTTCCTTTTTATCCTGTAAAGTGTGCTCCCAACCAATGTCAGATTTAGATCGCCTAATAAACCATTTGACGGAAGAACATAAAATACCTTTCGACAAAACGGTCGATTGTCGCTTACAGCCATTCAAATTGGTGAAGGACAATTTCGCGTGTCCGATTTGCGGGACGGTTTACAGGTATTTCGCGATGCTCCTCAAACACCTCAGCGCGATACACACAGACAATAAAAACGTTTGCGTTTATTGCGGTAAGTGTTTTCGGTCGCATCCCAACCTTAGAGCTCATGTGTCTCGTCGCCACAAATCAGCGGCGTTCAAATGCGATCGATGCGAATGTGAATTCTCTTCGAAGGAATATTTACAGGCGCATTTGGGCAAAGTGCACGGCGTTAAAGTTGTACTGTGTACGATTTGTAATGAAATGTTCACATCGCGTTATCTAATGCAACGGCATCTGTTGAGCGAACACAAATCCGGTCATGGATGCACACATTGTGGCAAATTGTTTGTAAGAAACTCGTACATGATCAATCACGTCAGACGAACGCATTACAAGGAAAGGAATGTAAACTGTTCGGTTTGTTCCGAGAGATTTTTCGATGTGCAGGGATTGAAAATGCACATGGTGAAACATTACGGCGAAAGGAATTTCCATTGCGATGTCTGCGGGAAGCGATTCCTTTGGAAGAAGAACCTTAGAGGGCACATGTCGTCCCACTTCAAAAACTCgggtGAAATACCGCATGGCCCATTCGAGCACTGTATCTCCGAACGGAGGCGGCAGAACTTGCAAATACTATTCAACAACACAACCGTAACGCCATTCAAATGGCGCGGGGGCTACCTATGTTTCTATTGCGGTAGAAAGTTCACGGAATACCAGACTTTCACAAAACACACGAGATCCCACGGACCATGTTCCACGAGGGATTACTCTTTGAAATCTGTCACCGGGAGGCACATAGAAATCAAGATAGACATATCGGCCATTTCTTGTGAAATGTGCTACGAACCGTTCAATCGGTTCGACGAAATAATCGACCATTTAATAGGGAAACACAATTTGGATTACGATAAAGATATAGACACGCTGTTTCAAGAGTACAGACTGTCGGATCTCCGCTGCACCTTCTGCGAGATGCAGTTCAGTTATTTCACTTACCTAGTGAATCACGTGAACATCGCACATCCGCAGAACAATTTCGTTTGCGACGAGTGCGGTGcgacttttaataaaaagagaaatttgTCTTGTCACATCAAGCGCTTCCATCGCTTGGGTGGTTACAAATGCAGCGAGTGTTCGCAAAACTTCGAAACCGATTATCTATTGCGTAAACATCAAAACGATTTCCACTGTAAAAAGTGCAAACGCTGTGACTCAAATTTCCCCACCTACAGTCTTTTACAAAAACACATACAGTGCGACCATCCGGACGATGGTAATGTGAAATGTCCGCATTGTTTCAAACGGTGTCACTCTTCCCAAGGTCTAAAACAGCATATAGACAAGTGTAGCTTGAAAACGGCCGAGCGCGCAGAACTACCGTCAAAAAAGTTATTCCCCATAGACAATCTAATGCAACCGATAAAGAAGCAGAACGTTATGCAAATAAGACAGAATATACAATGCGTTCTGAACATGTCGACGGCAATGCCGTTTCAATTTTTCGCGAAACTATCATGCTTTTATTGCTCCACGAAATTCGACGAGTTCGAAGACCTTAGGAATCACACGGTTTCGGAGCACCCCGTGTGCGATTTGGAATCGAAGTGCATGAAGAGGTTCAAAGGTGAAAGGGTGTCCGTGAAAATAGATATAATGTCTTTGGCTTGCAAAGTGTGCGGGGAGGCGATTGAAGAATTCGAGAATCTTATCGATCATCTTATAATAAAGCACAACGCCAACTACGACAAGTCACTCGCGGAATGCCTGGAACCTTATAGAGTGGTGAAGGACAACATACCGTGTCCCCTATGCCCGAACCTGACGTTTAGATACTTCGGCATATTGTTTAGACACATTAACGCGGAACATAGTAATTATAATAGGATATGTGACTTCTGCGGTCGCGGATTCAAAAGCGTCAACAATTTGAAGGTACACGTGACGTACGCTCACACCGGCGCATGCGAATGCGGCGTTTGCGGGGCGAAGTTCAGGAACCAGTGGTGTCTCAGCCGGCACAAGGCCAAAAAGCACGATGCGAAAGAATACAAATGCCCAAAGTGTCCGGAGCTATTTTCGACGCAGTACCACAAGCAAAAGCATCTGATAAAGGTCCACGATGTGGGACACAAATGCACGTACTGCGGTAGGATGTTCACGAGGAACTCCTTCATGAAGGATCACATAAGGAGGACGCATTTGAAGGAGAAGAACGTCGTTTGCTCCATCTGCAACGAGCGGTTCTTCGACAACTACCTGCTCAAGTTGCACACGGTGAAGCACAAGGGCGAGAGGAAGTTTGCTTGTGAAATATGCGGCAAAGCGTTTCTGAGGCGAAGCAACCTTTGCGCCCACAAGGATATGCATAAAAAGTACGGGCATATAGAATCGTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMDDTEVYADMLLECFDISISQHNEGPNGPNRLICEVCITRLRDACNFKKQVMASEKKFVDMIGRGAFKPTVVLYQGPLKVETIVDDRPAQMQAVEYLEDNIDFEDDEILKNENTEQTVSEDITVETLPVKGKKGRPKKSTVDARMLKKSKVTKLEEKPKSSKALKDKMAPTKMASANKLRRMNLQILFNNTSLIPFKWRRKYMCFYCGEDLPRYDQLKKHTKAHGACSDADKAIKLVKSGDVEVKIDVSDISCDLCEESFSSVDNIIEHLISKHKILYDKGVSLELKAYRLVDLKCLFCDEKFNFLDKLIVHVNKSHSNQCLPCVECNQSFNKKRDLEAHWRAYHKKEYICLKCSINFQSYAALRKHKLHEHPSTCNICFQYFSSSSKRLKHMKEEHASAGLQCGFCHKIMSTKQCSLQHASKCNPMHDTKISKETIVVDNEKKSSVKQIRINLVCIINMSTAMPFKYYMSRFRCFFCPKDFTECDDLKRHTVIEHPICDTKLKSMKLRSREDGRIKIDVSFLSCKVCSQPMSDLDRLINHLTEEHKIPFDKTVDCRLQPFKLVKDNFACPICGTVYRYFAMLLKHLSAIHTDNKNVCVYCGKCFRSHPNLRAHVSRRHKSAAFKCDRCECEFSSKEYLQAHLGKVHGVKVVLCTICNEMFTSRYLMQRHLLSEHKSGHGCTHCGKLFVRNSYMINHVRRTHYKERNVNCSVCSERFFDVQGLKMHMVKHYGERNFHCDVCGKRFLWKKNLRGHMSSHFKNSGEIPHGPFEHCISERRRQNLQILFNNTTVTPFKWRGGYLCFYCGRKFTEYQTFTKHTRSHGPCSTRDYSLKSVTGRHIEIKIDISAISCEMCYEPFNRFDEIIDHLIGKHNLDYDKDIDTLFQEYRLSDLRCTFCEMQFSYFTYLVNHVNIAHPQNNFVCDECGATFNKKRNLSCHIKRFHRLGGYKCSECSQNFETDYLLRKHQNDFHCKKCKRCDSNFPTYSLLQKHIQCDHPDDGNVKCPHCFKRCHSSQGLKQHIDKCSLKTAERAELPSKKLFPIDNLMQPIKKQNVMQIRQNIQCVLNMSTAMPFQFFAKLSCFYCSTKFDEFEDLRNHTVSEHPVCDLESKCMKRFKGERVSVKIDIMSLACKVCGEAIEEFENLIDHLIIKHNANYDKSLAECLEPYRVVKDNIPCPLCPNLTFRYFGILFRHINAEHSNYNRICDFCGRGFKSVNNLKVHVTYAHTGACECGVCGAKFRNQWCLSRHKAKKHDAKEYKCPKCPELFSTQYHKQKHLIKVHDVGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVVCSICNERFFDNYLLKLHTVKHKGERKFACEICGKAFLRRSNLCAHKDMHKKYGHIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -