Bbre015267.2
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010003947.1:73150-82392[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00057 0.036 14.7 0.4 1 21 5 25 5 28 0.87 2 27 0.0066 0.42 11.3 2.8 1 23 101 123 101 123 0.98 3 27 0.0022 0.14 12.9 0.2 1 23 127 149 127 149 0.96 4 27 0.0032 0.2 12.3 0.1 1 23 154 177 154 177 0.91 5 27 0.017 1.1 10.1 4.3 1 23 183 206 183 206 0.95 6 27 4e-05 0.0026 18.3 0.2 1 23 213 236 213 236 0.98 7 27 5.2e-05 0.0033 18.0 1.5 1 23 242 264 242 264 0.97 8 27 6.6e-07 4.2e-05 23.9 1.7 1 23 270 292 270 292 0.99 9 27 0.00026 0.017 15.7 3.6 1 23 298 320 298 321 0.95 10 27 0.064 4.1 8.2 0.3 1 23 461 484 461 484 0.93 11 27 2.2 1.4e+02 3.4 2.1 2 23 509 531 508 531 0.93 12 27 0.00093 0.059 14.0 0.1 1 23 555 577 555 577 0.98 13 27 0.00014 0.0091 16.6 0.2 1 23 581 603 581 603 0.98 14 27 3.1e-05 0.002 18.6 0.3 1 23 608 631 608 631 0.96 15 27 0.013 0.84 10.4 0.8 2 23 638 660 638 660 0.93 16 27 0.035 2.2 9.1 5.1 1 23 667 690 667 690 0.97 17 27 0.00053 0.034 14.8 5.4 1 23 696 718 696 718 0.97 18 27 0.00016 0.01 16.4 0.6 1 23 868 891 868 891 0.95 19 27 8.8 5.6e+02 1.5 0.9 2 23 917 938 914 938 0.67 20 27 5.2e-06 0.00033 21.1 0.4 1 23 960 982 960 982 0.97 21 27 0.00015 0.0098 16.5 0.3 1 23 986 1008 986 1008 0.98 22 27 0.00011 0.0071 16.9 1.2 1 23 1013 1036 1013 1036 0.95 23 27 0.00011 0.0068 17.0 1.0 2 23 1043 1065 1043 1065 0.97 24 27 0.00015 0.0097 16.5 0.3 1 23 1072 1095 1072 1095 0.98 25 27 0.32 20 6.0 5.8 1 23 1101 1123 1101 1123 0.97 26 27 2.6e-06 0.00017 22.0 4.1 1 23 1129 1151 1129 1151 0.99 27 27 0.95 60 4.5 1.1 2 20 1157 1175 1156 1177 0.94
Sequence Information
- Coding Sequence
- ATGAAAAATCTCTACCTGTGTTTCTATTGCGATCGACGGTTCTCTGATCCCGCCGAACTGAGAGACCACAACACTCTAGAACATTCTTCCTCTACCGTTACACAAATCAAATACGAGCTGACCAAACTCAAGAAGCACGAATTAGTCAAAGTGGATATCACCGATATCGGATGCAAACTGTGTACGGATCCTGTTTACGATTTGAGCGGTCTAAAGTTTCACCTGCTAGAGCGCCACGGAAAAAACGTTGATCCCAAATCTAACGATGGCGTCCTACCGTTTATGGTAACGAAGAGTGAATTTCGATGCGCTATATGCAAGCGGCAGTACGAAGAGTTCAAGACTTTGAACCATCACATGAATGTACACTTCCAGAATTTCATATGCGAGCAATGCGGCACCGGATTCATGACTCCGGACCGCCTCCGTACTCACAGTCTATCCCACGAGACCGGCTCTTTTCCGTGCGATGGTTGCGATAAAGTGTTCAGGTCGACCAACGCCAAAAACGAGCACTACGCGATTGTGCACAAGCAGGTCAAAAGGCACAGATGCCCGCACTGTTCGGAGGCCTTCCGTAACTACTTCCAGAGGAACAAGCACGTGTCCTCCGTCCACGGTTTGAAACTGAAGGAGTTCAAGTGCAACATGTGCCCGAAAGTGTTCACGCTGAGCGGAAAGCTGGGCGTCCACGTTAGAACGGTGCATCTGAAGATGAAGCGTCACTCTTGTGACGTGTGCGAGTGGAAGTTCTACTCCAAATCCGAATTGAAGGACCACATGGTCAGGCACGGGGGCGAAAGGAAATTTCAGTGTAACGTGTGCAAGAAATCTTACGCGAGGAAGTATACGTTGAAGGAACACATACGAATACATGAGAACGATCGGAGGTTCGTGTGCGTGGTCTGTGGACAAGCGTTCGTGCAAAATTGTAGTCTAAAACATCACGTTAAGGTCCACCATCCGTCGCACTTCATGAAATTTTCCAACGACTCAATACAGAGTGGATGGGACAAGGCAAAAGTGGATAGACAAGTGCAGAAAAAGCGGATCGTGCCTTTGTTTCAAGTGGATTACGATCGCAGCCTGTGTAGACCGCTGGGGACTGTGACGAATTTTAGCAAAGTTCTATCCTTGTCCAAATACTCAGGGAGATTCGTTGATATCAATACGAACGTACGAAATGACTGTACAACATCGCGCAGTCCCTCGCCTATATCTGTTGGCGGTAGAACACCCACACCGGATGAGACAGAGCTAAATACAAGGGAGACGGTAGTACATAAGACGGCTCCTAAAAAACAGGTGGATATAAGACAAAACGCATTGGCGGTATTTGAATTTTCAACTGTCTATCCCTTTATATACGGCAACAATAAATTCAAATGCTTCGTGTGCTCGCAGCCTTTCCTAGATATATCTCTATTAAGGAATCACATGGTCGAAATGCACACTTTCGCACCGTTGAAGAGATTGGTCAACAATCGAAGGGAAAACGTCGTAAAAGTCGACGTCAGCGAGATGAGTTGCAAGCTTTGCTCTCTTAAACCGACCACCTTGCACCAGTTGAAGACACATCTGAAAGAAGACCACGCAAAGCTCATCGATCCAAGTTTAAACGACAATATAATACCATTCAAACTCGACGGCGAGGAGGGATCGTTTAAATGCGTCATGTGCGACGAGGTTTTCATCAAAGTGCGCACACTTGTCATACACATGAGCGTCCATTTCAATAACTATAGCTGCGAGATATGCGGCTCGGTGTTCATGACGCTGCGTCTGCTAAAGAAACACCTGGAGGTACACGAGAGCGGCAGCTTTCCCTGCGACCGCTGCACCAAAGTGTTCAATACGGCATACAAACTGACGTTGCATATACGTGGAGTTCATTTAAAGCAGTATCCCCGCCGTTGCCCCATGTGCCCGGAGAGATTCAACTCGAACTACCGACGCACCAAACACCTACAGGACGTCCACAATCAGTCCACTCGCGTCCACAAGTGTGAGACTTGCGGCCGCGGATTCAACATTAAATATCACCTGGTGTGTCATATACGCTCGGTGCATTTGCAGGAACGGAATCACCAGTGCAAAGTTTGCCTGCAAAGGTTTTGCAACAAGGAGACTTTGAAGCGACACATGGTCATACATACAGGATTCATCGAAGTGACAGATTCGACAATAACACTCAAAGACAGTGATGGTTCTCGTATAAAGTTAACGGTACTCAAGAAGCCTATACCGATAGATAAACTTGTTTACGAATATGAAGAGAGTGAAAAAGAGGATACAAAAGAAAACAGTAAAGAAATACCTTCAAGTAAATTACATAAACGTAGAATAAAGAAGCACTCACAAAATTCGCACATACAAAAGTcatctattttatttctaaaggaACCAATACCGTTGGACGATATAGACGCGTCACAGACGATACAGTTGTCTGAAAGAATAACCACTTTCAATGCGATAAATGTAAAAGCTCATCCAACAAATAGAGATGAGATAACATCACAAGAAAAGGCATGGCAGCGAAACGCGATAGCTATAATAGAATTCTCCTACGTGTATCCATTTATTTATGGttgcaataaatataagtgTTATTTCTGTTCCAAATCATTTGTCGATGCGGAGTCTTTGAGGGATCATACAATAAACGCGCATACAATTAAAGaattcaaaagaaatttaaacaaTAGAGTACGCGATAAAACTTTGAAAGTGGATGTGGCATGTCTCAAATGCAGGCTGTGTTCGGACACGCCGTCCAGTTTGAAAGATTTGAAAGCGCATCTCAAAGGGCACGGCAAAGATTTAGATGTCGAATTGCAAgataatattataccattcaaATTGGGCACAGATGTTTTCGACTGTCAAATCTGCGGTGAGAGCTTCAAGAGGCTTAGATTACTCATAATACACATGAGTAAACACTTCAACAACTACAGCTGCGAAACCTGCGGTTCCGTGTTCGTTTCGATGAACCTATTGAAGAGACATCTGCAGATTCACAAGATCGGCAGTCACCCGTGCGACAAATGCGAAAAGGTCTTCAGCAGTTCGGCGAAAAGGAATCGGCACATAAGGGAAGTCCATTTGAAACACTACACCAGGACGTGTCCCATTTGCCCACAACGTTTCAATTCGAACTATCAAAGGACCAAACATCTGAGGGTGTTTCACAATCAGGAGAATGCCGCTTACAAATGCGAGGCATGCGGCAGGAAATACGATTTGAAGTACCAGCTGATCGTGCATATAAGATCGGTTCATATGCAGGAGCGAAATCACGAGTGTGGTGTATGCCATTCGAGGTTCTTCGCCAGATACTGTCTGACTAGGCACATGGACGTTCACACTGgtgataaaaatttcaaatgtcAAGTGTGCGGGAAGTGTTATGCGAGACGTAAAAATCTCAGGGATCATTTGAAATCGCACGAAACAATTCAAAGTTATTGTTCCGCGTGCAGTCAGAATTGTAATGATCATTCGGCCTTAATGTCCCACATGGATGATGTCCTTGATAACctgtag
- Protein Sequence
- MKNLYLCFYCDRRFSDPAELRDHNTLEHSSSTVTQIKYELTKLKKHELVKVDITDIGCKLCTDPVYDLSGLKFHLLERHGKNVDPKSNDGVLPFMVTKSEFRCAICKRQYEEFKTLNHHMNVHFQNFICEQCGTGFMTPDRLRTHSLSHETGSFPCDGCDKVFRSTNAKNEHYAIVHKQVKRHRCPHCSEAFRNYFQRNKHVSSVHGLKLKEFKCNMCPKVFTLSGKLGVHVRTVHLKMKRHSCDVCEWKFYSKSELKDHMVRHGGERKFQCNVCKKSYARKYTLKEHIRIHENDRRFVCVVCGQAFVQNCSLKHHVKVHHPSHFMKFSNDSIQSGWDKAKVDRQVQKKRIVPLFQVDYDRSLCRPLGTVTNFSKVLSLSKYSGRFVDINTNVRNDCTTSRSPSPISVGGRTPTPDETELNTRETVVHKTAPKKQVDIRQNALAVFEFSTVYPFIYGNNKFKCFVCSQPFLDISLLRNHMVEMHTFAPLKRLVNNRRENVVKVDVSEMSCKLCSLKPTTLHQLKTHLKEDHAKLIDPSLNDNIIPFKLDGEEGSFKCVMCDEVFIKVRTLVIHMSVHFNNYSCEICGSVFMTLRLLKKHLEVHESGSFPCDRCTKVFNTAYKLTLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCETCGRGFNIKYHLVCHIRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGFIEVTDSTITLKDSDGSRIKLTVLKKPIPIDKLVYEYEESEKEDTKENSKEIPSSKLHKRRIKKHSQNSHIQKSSILFLKEPIPLDDIDASQTIQLSERITTFNAINVKAHPTNRDEITSQEKAWQRNAIAIIEFSYVYPFIYGCNKYKCYFCSKSFVDAESLRDHTINAHTIKEFKRNLNNRVRDKTLKVDVACLKCRLCSDTPSSLKDLKAHLKGHGKDLDVELQDNIIPFKLGTDVFDCQICGESFKRLRLLIIHMSKHFNNYSCETCGSVFVSMNLLKRHLQIHKIGSHPCDKCEKVFSSSAKRNRHIREVHLKHYTRTCPICPQRFNSNYQRTKHLRVFHNQENAAYKCEACGRKYDLKYQLIVHIRSVHMQERNHECGVCHSRFFARYCLTRHMDVHTGDKNFKCQVCGKCYARRKNLRDHLKSHETIQSYCSACSQNCNDHSALMSHMDDVLDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -