Bbre008507.1
Basic Information
- Insect
- Baronia brevicornis
- Gene Symbol
- -
- Assembly
- GCA_031353405.1
- Location
- JASFAT010001913.1:71138-80923[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.8e-10 1.1e-06 28.4 0.0 2 39 147 185 146 189 0.87 2 4 1.2e-11 2.3e-08 33.8 0.3 2 39 201 238 200 242 0.93 3 4 1.4e-14 2.5e-11 43.2 0.1 4 45 258 300 255 300 0.96 4 4 3.1e-19 5.6e-16 58.1 0.0 1 44 307 351 307 352 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGTTACGGGTTGTTCGAAGTAAAGTGTGAGCCGCCATCGGATGGAGAAGACAGCAATTCGCAGTTTGCACATGCATACCTCCATAACCAGGTACCACCACCGTTGGAGGAGTTGACCCCACCAGCACCAGCCGCTCCAGCCGCCACACCAGTAAGCTCTCGGGTTGAAAGCGCCCCGCGCGCCGCCTCTCCTGAGACCCTGGAGACCTTGGAACCGCGCACCGCGACGgtagacacattttttttaGGCTCCGCTCTACTTGACAGAGATCGCCATGGGCTGAGTAGAGATGACGACTGTGATTTCGCACCACTATTAATCAAGGATGAGCCCCAGTCTGAAGGAGAACAGCAGCAGTTGAGTGACGAGGCGAGCGACTCCGGTGGAGTTGGAAGTGATGGCGCGTCCCGTGGCAGCCCCAAGAGTTGGTCACCCCGGGACATGGAGCGTGCACTGGACGCGTTGAAGGACCGTCGCATGAGTCTCACTAAGGCGTCTGCAACGTACGGCATCCCGTCGACGACGTTGTGGCAACGAGCGCACCGGCTCGGGATCGACACGCCGAAGAAAGACGGCGGCGCCAAGTCTTGGAGCGAGGCCGACCTGCGCGAGGCCCTGCTTGCGCTGAGAGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATTCCAAGTTCTACGCTGTACAAGATCGCACGGCGCGAGGGTATCCGCTTATCGGCCCCCTTCAACGCGGCCCCGACGGCGTGGCGTCGAGTCGACCTGCAGCGCGCGCTCGCAGCGATCCGCTGCGGCGCGGCATCCGTGCAGCGAGCCGCCGCGCAGTTCGGCATACCCACCGGAACACTGTACGGACGGTGTAAGAGGGAGGGTATAGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCCGAAGACGCGATGGGCGAGGCGCTCGAGGCTGTCAGGGTTGGCCAGATGTCCATCAACCAGGCGGCAATCCATTACAACTTGCCATACTCCTCGCTGTACGGCAGGTTTAAGAGGTGCAAGTATCAGCTGCagAGCCTACAAGCACACCAACAATTGGACGTGCACAAAAACTTTGACGCGGAACACAATCAGCATCAGAATAGGGATCAAATGTATCACCACCAGCTCAATTCCCACGCGTCTCACCTGCCCGACGAGACTGGCGTGCACATACCGTACAGTCAGCTGATATCGCACGCCCACGAGCTGGAGGACCATATGCTCCAGGAGCAATATGGGCAGGAGGTGTATCAGCAAGGGTGGTACAGTGGTATCGCCACCAGTTGA
- Protein Sequence
- MPGYGLFEVKCEPPSDGEDSNSQFAHAYLHNQVPPPLEELTPPAPAAPAATPVSSRVESAPRAASPETLETLEPRTATVDTFFLGSALLDRDRHGLSRDDDCDFAPLLIKDEPQSEGEQQQLSDEASDSGGVGSDGASRGSPKSWSPRDMERALDALKDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSEADLREALLALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRVDLQRALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQSLQAHQQLDVHKNFDAEHNQHQNRDQMYHHQLNSHASHLPDETGVHIPYSQLISHAHELEDHMLQEQYGQEVYQQGWYSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -