Bdim011982.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- lola
- Assembly
- GCA_959613365.1
- Location
- OY390716.1:59398297-59403604[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0058 0.45 11.2 0.2 2 21 36 55 35 56 0.95 2 12 1.9e-05 0.0015 19.1 1.6 1 23 64 87 64 87 0.96 3 12 0.11 8.3 7.3 4.0 2 21 107 126 106 127 0.94 4 12 8 6.2e+02 1.4 0.4 1 19 135 153 135 154 0.73 5 12 0.0042 0.33 11.7 1.8 2 21 166 185 165 186 0.95 6 12 0.02 1.5 9.6 0.1 3 21 219 237 217 238 0.93 7 12 0.0001 0.008 16.8 1.4 1 23 246 269 246 269 0.93 8 12 2.6 2e+02 2.9 7.0 3 21 283 304 282 305 0.63 9 12 5.6 4.3e+02 1.9 0.4 1 8 313 320 313 325 0.87 10 12 0.21 16 6.3 0.9 2 21 339 358 338 359 0.94 11 12 0.00035 0.027 15.1 0.4 1 21 403 423 403 424 0.97 12 12 1.3e-05 0.001 19.6 2.3 1 23 432 455 432 455 0.96
Sequence Information
- Coding Sequence
- ATGTTGGCAATAGTTTTCGACTTGAATGAAGTTGGTAAAGaTGTTAATGGCGAATATCAGAATAATCATAGATCGTCTACCATCAATGAAGGAGACTCCTGCGTGACGTGTGCTCGCTGTTATAGAACTTACCGTAATACGGCTAGTTTAAATGCTCATTTACGTTTCGTATGTGGTGTCGAACCTCGATTCACATGTCCTCAGTGTCCTTACAAAACTAAAACGAAGGTAACCTTGCAAAGGCATATGATTTATAAACATGATAGCAAACGAAGTATTCGTAAATCTTCTGCCAGCACTGGAGAAGAGTCAAGGCTGACGTGTGCTCGATGCTTTAGAACATACCGTCATATGTCTTCGTTTAGCAAACATTTACGTCACGAGTGTGGTGTCGATCCTCAGTTCTCATGTTCCCAGTGCCCTTACAAGAaGGCTGACAGCAGTgaacaaaatattcataaatgGTCTACCAGGAATGAGAAGGAACCAAGGCTGACGTGTAATCGATGTTTTAGAACTTACCGTTATACTAGCGGCTTGAACCATCATTTACGTTTAGAATGTGGCATCGAACCTCAGCTCGCCTGTCCTCAGTGCCCGTATAAAAatactCGTGACTCGTGTGGCAAAAATGGAGCCAAATCTGGTCTGGCATGTGCTCggtgtttaaaaatctaccgTAGTGCGGGtgcgctgaaaaatcatttacgtTACGAATGTGGCATCGAACCTCAATTTGCTTGTCCTCAATGTCCGTACAAATGTAAACAGAAGGGAAGCTTGAAAAGGCATGCGGCTATAAAGCATAatactcGTGAATCGTCTGTCCGAAATGCAGCAGAAGCTTGTGAGACGTGTGATCGGTGTTTTAGAACTTATAGCTGTATTGGTAATTTACAGAGGCATTTACGGTACGAGTGTGGCGTCGAACCTCAATTTCCTTGCCCCCATTGCTCGTACAAAAattcACAGTCTCGTAAATCGTCTGTCAAGATGGAAGGAGTAGCATGTGTGACGTGCGACAAATGCCTTAGACCTTATAGTTGTATGAGTGCTTTACGAAGACATTTACGTTACGAATGTGGCGTCGAACTACAATTTTCGTGCCCTTATTatCCGAATATAGAAAATGTTATTTGCAATCCTCGAGCTAAACGAAGTTCTCGCAACAAATCTAAATCTTCCGCCGCAAAAAGTGACGAAGGTTTCGTATGTGAACGGTGTTCCAAAAGTTATACTATTGTGGGTAATTTGCAAAGACATCAACGTTTCGAGTGTGGTGTCGAACCTCGATTCTCTTGTCCTTATTGTTCACGCAGGACAAAACGTAAAGATGACTTGAGAAAACATGTTTTCACCCTGCATGGTAAAATCATGACTTAA
- Protein Sequence
- MLAIVFDLNEVGKDVNGEYQNNHRSSTINEGDSCVTCARCYRTYRNTASLNAHLRFVCGVEPRFTCPQCPYKTKTKVTLQRHMIYKHDSKRSIRKSSASTGEESRLTCARCFRTYRHMSSFSKHLRHECGVDPQFSCSQCPYKKADSSEQNIHKWSTRNEKEPRLTCNRCFRTYRYTSGLNHHLRLECGIEPQLACPQCPYKNTRDSCGKNGAKSGLACARCLKIYRSAGALKNHLRYECGIEPQFACPQCPYKCKQKGSLKRHAAIKHNTRESSVRNAAEACETCDRCFRTYSCIGNLQRHLRYECGVEPQFPCPHCSYKNSQSRKSSVKMEGVACVTCDKCLRPYSCMSALRRHLRYECGVELQFSCPYYPNIENVICNPRAKRSSRNKSKSSAAKSDEGFVCERCSKSYTIVGNLQRHQRFECGVEPRFSCPYCSRRTKRKDDLRKHVFTLHGKIMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -