Bdim014031.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390717.1:27416737-27420120[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.021 1.7 9.5 2.2 2 19 103 120 102 125 0.88 2 15 3.5 2.7e+02 2.5 0.3 1 20 133 152 133 153 0.91 3 15 5 3.8e+02 2.0 0.0 9 23 178 192 168 192 0.85 4 15 0.012 0.94 10.2 3.0 1 22 299 320 299 323 0.90 5 15 0.016 1.3 9.8 1.1 2 23 326 347 325 347 0.94 6 15 0.0011 0.084 13.5 1.3 2 23 383 404 382 404 0.95 7 15 8.2e-05 0.0064 17.1 1.0 1 23 410 432 410 432 0.97 8 15 1.3e-06 9.7e-05 22.8 0.3 1 23 438 460 438 460 0.98 9 15 0.081 6.3 7.6 0.6 1 22 472 493 472 495 0.86 10 15 0.017 1.3 9.8 3.6 1 23 511 533 511 533 0.99 11 15 0.042 3.3 8.5 1.0 1 23 542 564 542 564 0.97 12 15 0.13 10 7.0 5.9 1 22 591 612 591 615 0.91 13 15 0.0005 0.039 14.6 1.7 2 23 689 710 688 710 0.96 14 15 1.3e-06 9.9e-05 22.8 2.1 1 23 719 741 719 742 0.95 15 15 0.0068 0.52 11.0 0.1 2 20 747 765 746 767 0.91
Sequence Information
- Coding Sequence
- atggaagctgttaataaaaattcggcAACCAACAAGGCTACGACGAAATTTCGCGAATTGTGTGCAATTTCGAGCTTCCTCAACACCGGCTTGACTCCGGAACAATTGCATTTGTGttgtaaattaattaaaaaaggaGTTAATCCGGAAGCTTTGGCACATTCTGTAAAAACCgaTAAGAATGACGAGTCTTTCGACGAAGAAACTGTTCGCGGTCGCGGTCGTCCAATCGGTGCTAGAACGGTGGTGAAATCGGTAAACCTTAAAAAAGTCGCCgaaatcgatcaaaaaaaatgcaaccatTTGCAATGCAACATTTGCAATATACAATTCAGCCAgctcgtaaatttttccaaccactgcctaaaaaatcacttcaattCGTCGTATTACCAATTCGATTGCGGTTTTTGTTACGAAATCCATACCTCGAAAGAGAGCCTTTTGAAGCATATCATTTGCCAGTCGGGCGAACTAAAAGATAAATCTAACGTCACCATCGTGTGCCCTCTTTGTGTCCTTCCACAAGGTAGCTTTTCGTCGGAGAGCGAATTCGGTCAGCATTTACAGTACCACGTTGATTCCCAACAAAGCGGTAATTTCTGCGTGTTACCTTCGTGCAAATATTTAGCTTACGATATCGACGACTTGGCCAAACATATTATCGGTACCCATACCAATCAAATTGCCGATTCTAATTGCCTGCTATGTAAAAATCCCCAATCGTCGTCGAATTTGAACGATCCCAAAGTCGATCCTGATTTGTTGAATTCGTACATCGAAGAGGTGGATGGCGCCGAAGAAACGTGTCCTTTATGTTATACCATTCTAAAAGATCTCAATACAGTGTTGGTGTCCGCGAACGAGGtgatttctttcgaaaaacctAAATATTACCGGTGTACGATTTGCAATTCGGGATTCAGTACGCAAACCAAAGTTACCAAACATGCCTGTCGTCAATTGCACACTACGGTGTGTCCCGAATGTAACCGACAGTTTAATTCGAAGAAAAGGCTCGTATTCCATTTGCAATCTCATCTAGATCCTTCGATGACCTTAAGGTGCGACGTCTGCATGCTGACTTTCAGCGACGAAACAACCTGCTACGATCACGTACGGTTCAGCCACGAGTCGGAAACGTTATGTTGTGACACGTGTGGCAAAACCTACATCACCAGAATAGGACTGAGTATGCATCAAATGTACCACGACGACGTGCGTAAATTCAAATGCTCCGATTGCGGTAAACGGTTCTTGAATCAGGCTACTCTGAAAGAGCATCGTGTATCGCACTTAAACGTGAAGCCATTCCAGTGCGATATTTGTGGCAAATCGCTGTCTCGAGCTTCTCGTCTACGTATCCACCTGAAAGTTCACTCTGCCCGGAATagcaccaattttcaaaaatgctacACTTGCAAGATCTGCGGCTTTGTGTCATTCTCCAGCGACCGTCTGCTCGAGCACAATGTCAAAACGCACGACAGCAGTGAGAACGATTCCAAGACGTCGATTTTGCACAAACTGTACCGCTGCGAATTCTGCGACAATTGTTACGAAATGCCTTCGCTTTTGCATCTACATCGAGAAACCCACGCACCGGATACGACCGAAAATCCATTCGTTTGTGGCCTTTGTAACGGATATTTCAAAACGTACTCGCGTCTCGTCACCCATAAGCTGTCTCATGGCATCAATACCGAAACTCATATTCTGCAAATTAGCTCGAGTCTCGAGAGCTCCGATAGTTTCATCATTCCGcaatatttttgttgtaaatattGCGATAAATTGTACGAGCAATATACCGCCTATAATATCCATATGAAGCATTCGAAGCATTTCGTACCCAAGGATAAAACTAGCCCGAAACGAAAAGTAGAAGAAGTCGTGAAGATTAATCGTAAATCCAGTCCTAAACCTCGTCCAACCAACGCCgtcgataaaaaatacaaacaacgAGAAATCGAATTGGCTGTTCAGAGTTTGAATAAAGAGAACATCCCACCGATCAAAGAATCCAAACCTATCGTTCGAGTACATTCCAacttggagaaattgatttgcTGCAaatgtggtaaaaatttcgccTCCGAGAAGTTACTTCGTATCCACGAAAACAGACACAATCCTCGTCGCAAGAGGAAGACTTATTCGTGCGAAGATTGTCCTAGGTCGTTTACCAATAAAACCGAGCTGCGAAAACACGAAAGCGTCCATCATAAACCTCACCTAATGTGCGAAAATTGCGGTAAAGAATTCCGTTACAAAGGTTGGTATTCTTtgcatgtcgataataaagtttgtTTCCGGACTGACGAAGAAGAGTTGATTccagaagaattgaaaactaatttacCCTTTACCGATATCATCAATCGTATATTGCTGTTTTAA
- Protein Sequence
- MEAVNKNSATNKATTKFRELCAISSFLNTGLTPEQLHLCCKLIKKGVNPEALAHSVKTDKNDESFDEETVRGRGRPIGARTVVKSVNLKKVAEIDQKKCNHLQCNICNIQFSQLVNFSNHCLKNHFNSSYYQFDCGFCYEIHTSKESLLKHIICQSGELKDKSNVTIVCPLCVLPQGSFSSESEFGQHLQYHVDSQQSGNFCVLPSCKYLAYDIDDLAKHIIGTHTNQIADSNCLLCKNPQSSSNLNDPKVDPDLLNSYIEEVDGAEETCPLCYTILKDLNTVLVSANEVISFEKPKYYRCTICNSGFSTQTKVTKHACRQLHTTVCPECNRQFNSKKRLVFHLQSHLDPSMTLRCDVCMLTFSDETTCYDHVRFSHESETLCCDTCGKTYITRIGLSMHQMYHDDVRKFKCSDCGKRFLNQATLKEHRVSHLNVKPFQCDICGKSLSRASRLRIHLKVHSARNSTNFQKCYTCKICGFVSFSSDRLLEHNVKTHDSSENDSKTSILHKLYRCEFCDNCYEMPSLLHLHRETHAPDTTENPFVCGLCNGYFKTYSRLVTHKLSHGINTETHILQISSSLESSDSFIIPQYFCCKYCDKLYEQYTAYNIHMKHSKHFVPKDKTSPKRKVEEVVKINRKSSPKPRPTNAVDKKYKQREIELAVQSLNKENIPPIKESKPIVRVHSNLEKLICCKCGKNFASEKLLRIHENRHNPRRKRKTYSCEDCPRSFTNKTELRKHESVHHKPHLMCENCGKEFRYKGWYSLHVDNKVCFRTDEEELIPEELKTNLPFTDIINRILLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263890;
- 90% Identity
- iTF_01263890;
- 80% Identity
- -