Bdim010534.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390716.1:33882152-33883847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 1 10.1 0.2 2 23 177 197 176 197 0.95 2 11 0.028 2.2 9.1 2.6 2 23 204 226 203 226 0.87 3 11 0.00027 0.021 15.5 4.9 1 23 232 255 232 255 0.93 4 11 0.0021 0.16 12.6 0.1 2 23 266 288 265 288 0.97 5 11 9.6e-05 0.0074 16.9 0.8 1 23 310 333 310 333 0.96 6 11 0.098 7.6 7.4 1.3 1 23 349 372 349 372 0.97 7 11 0.072 5.6 7.8 2.0 2 20 383 401 382 403 0.93 8 11 0.031 2.4 9.0 0.5 2 21 409 428 409 431 0.94 9 11 0.00014 0.011 16.3 0.2 3 23 439 459 437 459 0.98 10 11 2.6e-05 0.002 18.6 3.5 1 23 465 487 465 487 0.99 11 11 9.9e-05 0.0077 16.8 5.0 1 23 493 515 493 515 0.98
Sequence Information
- Coding Sequence
- ATGAGTAACTTGTTAGCTCTGGGCAAACATCCGACGGCGTCTAAAGCCAATGATGAAGGCGGTAGCTTCGCTGCCAAACGTGCGAAATCCGATACTAAGACGAAGACAAAAACGGCAGGCGATGGCGGTGGCGTCGGCAGCAGTAACCATCTTAAACAGTCATCTCCAAGTAGTAAATCGAAAACGATCGGTAAGCCCATAGCTGAAGCAAAAGGGAAGACTCTAGTTCTCTATACCCCttttaaatataataaagATGCTAAACCGTCGAAAGTACCTGGTCCGAAATCGAAGACAATGCCGAGTGCTGAAAAACCATACACTCCTCCAGTTATAACGctggacgacgacgacgaattaaaaatattggaaaatgaatggacacaaggaattaaaaaagagAACGACGACAAAATAAGTGAAGATAAGCCTTCATCGAAATCGAAAGTTGCTCTCAACGAAATAGCCAATACTTCGACGACCGATGATACCTCCAAGACAGACAAGAAGACTGGTAGACCGCCGAAAATGTGCGACGTTTGTGGTAAAGTAGTCAGTGCTAAGCTATTCAAAGAGCACATGGTAATGCACAATGATCCAGAATCGATGACCTGCTCATGCTGCGGTAAACTCTTCAGTACGGTATCGACCCTGAAGAAGCATTTCATCTGGACGCATACTTCGTTACGACCTTTCATGTGCGATTTATGTGGCAACACGTTCAAACGCAATGATCATTTGAAGCTGCACCGAGAACATTTCCACGCTAACGAGAACACCGGTGGCAATGCGGTCAAATGTGGAATCTGCGGAGCTTCTGTGCAAACGATGGTTACGTTACAGAGTCACATGAAACGAGTACACGGCGAGAATAAAATCAAATCTTTCGATAAAGACCTTAATCATAAAATACTGGCTGATAAATCCTACGAATGCGGTATCTGCAgtctaaatttcaaacaatttagtTACCTTAGAATACACATCAAGTTCGTTCACGAGAAAGGCCTACCGTGGCATATAAATCAAGGTGCCAACGGACCATACAAATGCGAACCTTGTAAATCCACTTACGCGACGCTTCAAAGTCTACGCGAACATAACCGTCGACGTCACGACGGCGCTCCAGTCGAGAAATTCCACAAAGAATGTTCCCACTGTGGCATGCTCTATAAGAATCGCCTTCATTACTCCAAACATCTGGCCAAAATCTCCGGCAGACCTACCTGTTACGTTTGTTGGAACGATTTCGATAATCCGGACGATCTAAAAGTTCACATAAACTGCGAACACCTGGACGAGTTACCCTTCGGATGCGAACTCTGCGGCGTGAGATTCGTTTACTTGACCGAATTGAGAAACCACATGTATACCCATTCGAAAACGAAACAATTCAAATGCGATCTGTGTTCCCAATCTTTTGTTCGGAAAGATTTCCTCAAGTCTCATAAACGTCGACATGAAGGTATTCGAAGTCATACCTGCGACGagtgtaaaaaaagtttcgtcgAGTTTTGCGATCTAAGAAAACATATGCagatacatttgaaaaataaatcgtttCCAGTGAACGTCAATGTCAAAGAAGAAGACAAACACATCCAAGTCTCCTCCAattga
- Protein Sequence
- MSNLLALGKHPTASKANDEGGSFAAKRAKSDTKTKTKTAGDGGGVGSSNHLKQSSPSSKSKTIGKPIAEAKGKTLVLYTPFKYNKDAKPSKVPGPKSKTMPSAEKPYTPPVITLDDDDELKILENEWTQGIKKENDDKISEDKPSSKSKVALNEIANTSTTDDTSKTDKKTGRPPKMCDVCGKVVSAKLFKEHMVMHNDPESMTCSCCGKLFSTVSTLKKHFIWTHTSLRPFMCDLCGNTFKRNDHLKLHREHFHANENTGGNAVKCGICGASVQTMVTLQSHMKRVHGENKIKSFDKDLNHKILADKSYECGICSLNFKQFSYLRIHIKFVHEKGLPWHINQGANGPYKCEPCKSTYATLQSLREHNRRRHDGAPVEKFHKECSHCGMLYKNRLHYSKHLAKISGRPTCYVCWNDFDNPDDLKVHINCEHLDELPFGCELCGVRFVYLTELRNHMYTHSKTKQFKCDLCSQSFVRKDFLKSHKRRHEGIRSHTCDECKKSFVEFCDLRKHMQIHLKNKSFPVNVNVKEEDKHIQVSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491322;
- 90% Identity
- -
- 80% Identity
- -