Bdim001717.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390714.1:27877639-27881627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.8e-05 0.003 18.1 1.1 1 23 116 138 116 138 0.97 2 12 0.021 1.6 9.5 3.2 1 23 144 166 144 167 0.95 3 12 0.92 72 4.3 0.1 2 13 255 266 254 267 0.88 4 12 0.00026 0.02 15.5 3.8 1 23 346 369 346 369 0.98 5 12 0.0045 0.35 11.6 5.0 1 23 376 398 376 398 0.98 6 12 0.045 3.5 8.5 0.7 3 19 406 422 404 427 0.92 7 12 0.0008 0.062 14.0 0.8 1 23 432 454 432 454 0.98 8 12 4.7e-06 0.00037 21.0 1.1 1 23 460 483 460 483 0.97 9 12 4.1e-06 0.00032 21.2 2.2 2 23 491 512 491 512 0.98 10 12 0.00092 0.071 13.8 2.1 2 23 519 540 518 540 0.96 11 12 1.9e-07 1.5e-05 25.3 1.4 1 23 546 568 546 568 0.99 12 12 0.00051 0.04 14.6 0.9 1 21 574 594 574 595 0.95
Sequence Information
- Coding Sequence
- ATGGatttaatttatcatttcaGATTGGGCGAAGAATTGATTTATCTTTATGTCCAGTCAGAAGCGCAAGACTCCGCTGAAAACCAATTAGTGTCTccttcgattgaaaaatattaccaaaaTACATCTAACCGGCTCAACCTACTATTTGATAACGATCTCGATCGAAATTCAGTCATAGAAATTGAGGAATCTAATAACCCCGATGTCATCAGCAAATCGAACATCGAACAAACGAGCACCTACTCGgtggaatttccaaaaaatgatcgtTTCGCCGATGTTGAATTGAAATTCGCCAGTAAAAAACGTACCAAAAGCAACGACGCCAAAGGAAGTATATTGTATTCGTGTGAAATTTGTGACGTCTCATTTTCAGATAAAACCGATTACCATAAACACGAACTGGTTCATTATGTAGATTACCCTTACGAATGTGCGTCTTGCGGAGACCGTTTCAAGCGATTTAAACAACTGGAAAATCATAAACTGTACCATCATGCGCCAGATTCATCTGACGAAAATGATTCCAGTCCAACTACTGCTTtcgaaatcgaagaaaatgatCGATATCGCGATGATACGCCGGAAAAACAGTCTCGGAAGAAATCTTGCGGCGAAGAACCTCGATCTAAAGTTATTAAACATTTATCTCACGACTTACAAAGTACTActaaaagttcgaaaaaaaattaccaaaaacatgttgagaaaattgaccGAAAAATTCAGTTGTTGAGGCATAATAAGGAAGATATTCTCGTGTGTGAGGCTTGTGGTCAAACGTTTTCATCGTCGAGGATTCATAAATGCTTAAAACCTAAAACTACGTCTATATCTAACCTGCGTTCCAAGCCTAAGGTCATTTACAAAACATTCGATCTACCCTACGATCCCAAATTAAATGACAAGAAAgtgagaaaactgaaaataaaactaaagaAGAAATCCAGCGCTGAAAGTTCCAACACAAGTAATGGTAAAagcacgaagaaaaaattgaaagtgaaattaaaatcaaaccaGAAATCATCTTTCAAATGTAAGTATTGTGACGAAGAATTCAGCTCATCGCTCAAACGTCGAAAGCATCAACGAAGCACTCACCCCAACGAAGGCACAAAATACGATTGCGATAAATGCGATTATAGTACTTATACGAAAGGCTGTTTCACCACTCATTTAAAACGTCATGTTAAGCAGTACGCTCTATTTTGCGAAGAGTGTaatttgggatttttcaataacaCCGAACTGACAACGCACGATATCAAATTCCACAACTCGCAGCCGTTTCAGTGTGCCATGTGTAACGATCTATTCACTTCCAAAGGTAACCTTTACAGTCATATCAAGAGCCACGATCCTAATAACTCTTACGTATGCGAAATTTGCGGACGAACGTATAAGAAGAACAACAGCTATAAAAGACATATAGCCAGATCGCATTTAGGTTTAACTGCCAAAGCACAGTGCTCGGTGTGTGAGAAAGTTCTCAGTTCCAAGGAACATCTGAGAAGACACATGTTGACTCATACAGACGAACGGAACTGGGTATGTTCAACGTGCGGTAAATGCTTCCTTAGTAAGACTTATTTAACCGAGCATTCCAGAATTCATCTCGGCATCAGACCGtataaatgtgaaatttgcgaaaaatccTTCACCCAAAGAGGATCGTTGACTATTCATAAACGTTCGCATACCGGAGAAAGACCGTACAGATGCGAATATTGCAGTAAAGGCTTCGTCATGTCAACTCTACTCAGATACCATTTGAAGAAATGCGGAGAAGCTAAACTGAGTTTGCAAATGATCAACAATTCAGCTCCTATTCCTCAGATAGAATACAACGCGCCTGTTTACGATAAGTTACCTCCGCCTCATGTGGTAGAACCTGCAGAAATCGATCCTTTAAATAATTGCGCTGTTATTCATAGTACAAAATGA
- Protein Sequence
- MDLIYHFRLGEELIYLYVQSEAQDSAENQLVSPSIEKYYQNTSNRLNLLFDNDLDRNSVIEIEESNNPDVISKSNIEQTSTYSVEFPKNDRFADVELKFASKKRTKSNDAKGSILYSCEICDVSFSDKTDYHKHELVHYVDYPYECASCGDRFKRFKQLENHKLYHHAPDSSDENDSSPTTAFEIEENDRYRDDTPEKQSRKKSCGEEPRSKVIKHLSHDLQSTTKSSKKNYQKHVEKIDRKIQLLRHNKEDILVCEACGQTFSSSRIHKCLKPKTTSISNLRSKPKVIYKTFDLPYDPKLNDKKVRKLKIKLKKKSSAESSNTSNGKSTKKKLKVKLKSNQKSSFKCKYCDEEFSSSLKRRKHQRSTHPNEGTKYDCDKCDYSTYTKGCFTTHLKRHVKQYALFCEECNLGFFNNTELTTHDIKFHNSQPFQCAMCNDLFTSKGNLYSHIKSHDPNNSYVCEICGRTYKKNNSYKRHIARSHLGLTAKAQCSVCEKVLSSKEHLRRHMLTHTDERNWVCSTCGKCFLSKTYLTEHSRIHLGIRPYKCEICEKSFTQRGSLTIHKRSHTGERPYRCEYCSKGFVMSTLLRYHLKKCGEAKLSLQMINNSAPIPQIEYNAPVYDKLPPPHVVEPAEIDPLNNCAVIHSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -