Bdim010608.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390716.1:35069161-35073839[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4e-05 0.0011 19.5 0.1 2 23 83 105 82 105 0.96 2 16 0.028 2.2 9.1 8.2 2 23 188 210 187 210 0.96 3 16 7.8e-05 0.006 17.1 4.0 2 23 227 248 226 248 0.95 4 16 4.3e-05 0.0033 17.9 0.3 1 23 270 293 270 293 0.94 5 16 1.6 1.2e+02 3.6 4.5 1 23 352 375 352 375 0.91 6 16 0.24 19 6.2 0.1 2 19 394 411 393 411 0.96 7 16 1.1e-06 8.6e-05 22.9 1.8 1 23 426 449 426 449 0.97 8 16 0.024 1.8 9.3 0.1 2 23 469 491 468 491 0.93 9 16 0.002 0.16 12.7 0.4 1 23 499 522 499 522 0.94 10 16 0.6 47 4.9 1.4 1 23 548 570 548 570 0.95 11 16 5.6e-05 0.0043 17.6 2.9 1 23 576 599 576 599 0.95 12 16 0.0038 0.29 11.8 3.5 1 23 605 627 605 627 0.98 13 16 0.00086 0.066 13.9 0.7 1 23 633 655 633 655 0.96 14 16 5.3e-06 0.00041 20.8 2.1 1 23 661 683 661 683 0.97 15 16 0.0003 0.023 15.3 2.9 1 23 689 712 689 712 0.97 16 16 0.00062 0.048 14.3 4.0 1 23 718 740 718 740 0.98
Sequence Information
- Coding Sequence
- ATGGAAACCAAGTGCGTCACACAAGGTACCAGGAAACGAGGTTCACTTACTGCTAAAAAGAGACCAGCGTCAGTTGCTGGCAATACAGGTGGCGGAAGGGGTAGCGAAGAGCGTGCCAAAATGgtgaaaagcaaaaaaatacgaCCTGGGATGATGGAATCGCCTCCGGTACTGCCGTCTTCTGCCGAGTCAGGGTCATCACctctgtgtaaaaaatttcgttccaatgttaaaatcaaaaaatcaaaatgtaatatttgCGGCGTCTCTTTTACCGATTTGGACGATTTAAACTGGCATAAGGATACAATCCATGAGGTTTCCGATCCTCTGTCCAGTGCTGTAAGCGCAGTTCGTAAAAGTTCACGAATCCAAGCTAGAGCGATAGATAAAGCCAAAGTTGTTCGGCATGTCGAGtcaatggaaaaaagtaattcggACGAGGAACTTGTAGTGAATGATGTCATAATGATTGACAGTTTGAATTCAAGTGTTAAGAATGGTCGAGACAGTTGCGAAAATAACGTTTCCAAGAAGTCGAGCTATGTGAAAAATGCACTTTATTGTCATCACTGCGAGTACACTTGTAAAAGTAAACCCACGATGAGTAAGCATATGCGAAATTATCATCCGAGCGAATTGACTGGCCAAGGTGACAAAAGAAATCAAAGTATTCTCTCGTGCTCTATTTGTCTGAAAACATTTACTCATAAAACAAATCTTCGAAAGCACGTATTCAGTCATAATCCTCCGAATAATGGAGATTGTGAAGAGGTTAATAAGTCAGAAATAAAATGGAAGAGAGGATTCTGTTGTGATATCTGCGATCGTGCGTTTCCTAATCAAAGAGATTTACTGGCCCATCGTGATATTGTACACTATACAGAAGCTCCACTCgattggatgaattttttcgtaagtCACGCCAGGGTGAGCTATTGCGATAAGTGTTGCAAATATTTCAGAGAGAAAAGATTCCCAAACCACGAGTGCAAGAGCGATTCCGAAGAGGTAACTGAGAAAATACAACTCATGCTCGAGTCCAGTCCGTCCTTCAAATGTGATATTTGCTCATTGTGTTTCCATTGGAAGTGGATGTACAGGTCCCATCGAGAACGAATCCATCCTACTGTACCAGTTATTGACTGGGATACGTTGACGAAGGAAGAAATAACAATTTATTGCAAGTCTTGCCTGAAAGCCTTTGAGGACGAGGAGACATTGGCAAAGCATTGCGTCGAGTGTGTAGTCAATCGTGAAAATAAAGTGGAAATGTTTGTCTGTGGTTTGTGTGGTCGATCTTTCTGCCGAAAACCCGATCTCCAAAGACATTTAAAAGTAAAACATCCCGATCCTGATCAAGCAGATGTCAAAGATGTGGTACCAAGAGCAAAACAAATCATCTCGTGCCCGTATTGTGATATCAAAATGTCATCTCGTAGCAGTGTCTTGCAGCATATCAAGGATGCTCACGACATCGAGACTGATACGCCTTACGTGTGCGTACCTTgtaataaagttttcaaaaggaaAGCCACTTTGGATATGCATACTCAGATATACCATCCGAAGGAGGAGGACGCCGAAGAGactgaaaaaatccttaagGAAGCGGAAATCCTGCTCGATGGCGAGACTGCTTACCATTGCAATATCTGTAATCGTAATGTACTGAATTCGGGCCGCTTTGTAGCTCACTACAGATTGCACAAACTGGAACGAAAATTCACCTGCGATTTGTGCGGCAAGCAAACTCGCACCCAGCATCAGCTCAATACACATATCAAGTTTATTCACTTGGATATTCGTAATTTCGAATGCGACATTTGCGGCAAAGGTTTCCATTCGAAGCAGTCCTGCGAAGAGCATAGACGTATTCATACCGGAGAGAGGCCATTCTCGTGCGAAATCTGTGGCAAAACGTTCATCGCCATGAATGCCTTATTTacccataaaaaattccataacgATTTCTTCGCCCATCCTTGTTCCATGTgcccgaaaaaattcaaagtacgCAGATCGCTCATCAATCACATACGAACGCATACTGGAGAACGTCCCTATAAATGTGATCTGTGCCCGAAAACGTTCAACAACTCGTCCAGATTTTCATACCACAAAAAAGTAACCCATTCGGATAATCGACCTTTTACCTGCGATCAGTGTGGAAGTTGTTTCAAGGCGAATAAATTCTTAATGAGGCATATGAAATTGCATACAACTCGTACCCATATACAATTCCGCAGACGTAATAATCCGGCTTATTTCGCCAACAATGAAAACAACGCCAAGAAACCAAAAACCTTCTCGTCGAAAGAATCCAACCAAACTACCACGAATAGCCACCAACCCGTTGCTACTAAAATTTATACCGTGGCGCCATTTTacaccttttcaaaaataattcgcaATGAAGCGGAAACTTTACCGATTGATGGTGATTTGACTTCTGGAGATAAGGAACAGGCATTGACCAATAATTCAGGTCAAAATAAACTCGATGCAGTATCTGTTAATGATTCAGGTGGTAATGACAATAAAGATATCGTGTATTTATGA
- Protein Sequence
- METKCVTQGTRKRGSLTAKKRPASVAGNTGGGRGSEERAKMVKSKKIRPGMMESPPVLPSSAESGSSPLCKKFRSNVKIKKSKCNICGVSFTDLDDLNWHKDTIHEVSDPLSSAVSAVRKSSRIQARAIDKAKVVRHVESMEKSNSDEELVVNDVIMIDSLNSSVKNGRDSCENNVSKKSSYVKNALYCHHCEYTCKSKPTMSKHMRNYHPSELTGQGDKRNQSILSCSICLKTFTHKTNLRKHVFSHNPPNNGDCEEVNKSEIKWKRGFCCDICDRAFPNQRDLLAHRDIVHYTEAPLDWMNFFVSHARVSYCDKCCKYFREKRFPNHECKSDSEEVTEKIQLMLESSPSFKCDICSLCFHWKWMYRSHRERIHPTVPVIDWDTLTKEEITIYCKSCLKAFEDEETLAKHCVECVVNRENKVEMFVCGLCGRSFCRKPDLQRHLKVKHPDPDQADVKDVVPRAKQIISCPYCDIKMSSRSSVLQHIKDAHDIETDTPYVCVPCNKVFKRKATLDMHTQIYHPKEEDAEETEKILKEAEILLDGETAYHCNICNRNVLNSGRFVAHYRLHKLERKFTCDLCGKQTRTQHQLNTHIKFIHLDIRNFECDICGKGFHSKQSCEEHRRIHTGERPFSCEICGKTFIAMNALFTHKKFHNDFFAHPCSMCPKKFKVRRSLINHIRTHTGERPYKCDLCPKTFNNSSRFSYHKKVTHSDNRPFTCDQCGSCFKANKFLMRHMKLHTTRTHIQFRRRNNPAYFANNENNAKKPKTFSSKESNQTTTNSHQPVATKIYTVAPFYTFSKIIRNEAETLPIDGDLTSGDKEQALTNNSGQNKLDAVSVNDSGGNDNKDIVYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -