Bdim012160.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390716.1:62320049-62324257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.8e-05 0.0053 17.3 0.5 2 23 318 340 318 340 0.98 2 19 5.3e-05 0.0041 17.7 0.8 1 23 346 368 346 368 0.97 3 19 0.067 5.2 7.9 1.7 3 23 376 397 374 397 0.91 4 19 0.026 2 9.2 3.9 1 23 403 425 403 425 0.98 5 19 0.00092 0.071 13.8 5.1 1 23 431 453 431 453 0.97 6 19 7.1e-05 0.0055 17.3 1.1 1 23 459 481 459 481 0.95 7 19 0.0017 0.13 12.9 0.9 3 23 489 509 487 509 0.98 8 19 6.9e-05 0.0053 17.3 3.3 1 23 515 537 515 537 0.97 9 19 3.4e-05 0.0026 18.3 3.3 1 23 543 565 543 565 0.96 10 19 3.6e-05 0.0028 18.2 0.6 3 23 573 593 571 593 0.98 11 19 1.7e-06 0.00013 22.4 2.5 1 23 599 621 599 621 0.97 12 19 2.7e-06 0.00021 21.7 3.0 1 23 627 650 627 650 0.96 13 19 4.7e-05 0.0036 17.8 3.9 1 23 656 678 656 678 0.98 14 19 9e-07 6.9e-05 23.2 0.6 3 23 686 706 684 706 0.98 15 19 5.2e-06 0.0004 20.8 1.7 1 23 712 734 712 734 0.98 16 19 4e-06 0.00031 21.2 1.6 1 23 740 762 740 762 0.98 17 19 8.6e-06 0.00066 20.2 3.6 1 23 768 790 768 790 0.98 18 19 5.8e-06 0.00045 20.7 0.5 1 23 796 818 796 818 0.98 19 19 0.00018 0.014 16.0 2.3 1 23 824 846 824 846 0.98
Sequence Information
- Coding Sequence
- ATGTATCGTGCAAACATCGTAGGTAGTAACAACGAAGACTCCAAACCTGGAGAAGTATACATGAAGAGGACggaattacctatttatacaGAGAGCTCGCCTTCTTCACAATCTATTCAAAACAACGACgggaaaagaaatgaatttgttTTGCAAGGAGTTCAATTATTCAGGTCGGAAGGATGCAAATTGGTCCGTACAGTGCAATCGGTATCTGATAGATGCTCCACTTTTTTCAGAACTGGCGTCGCTCATGCTACCTCGAATTATGCAACTACGGTAGATTATCTCCGTGAAGATCGTAATATATTGCAACGAATCGGTGCAATCGGAGGCGGTGTTCTGTTTGGCAATATTTTAGGAATGAGAAGAGGCTTCATCAGACGTTTTTTGTATACAACTTCAGGAGGTCTTACGGCGGCTGCAATTTGTTATCCCGACAAAGCTGAAGAATATTCGAAGCAATCGTTACAATTGTCTAAAAAATACGTGATAATCGGCTATCACTTTTTAAATGGAGTTTCAAAAGACCTCATTGGTTATGAACTACCCACGTTTCCTTTGAAAAGCCAAGAACCACAGATCGCAGCTGTGTCAAATACTACCATCGCTCTCGACACAACCGAAAAAATCTGCAAGAATTTCAGTAGTTGTGATAAACATTTCGCTTCCGAAACTATCGTGAAAGAACATTCTCTCATCAACGACGTTTCAAAGAGTGAACCTGAATTCGACTCGCCCGCAAAAAGAAAAGAACCgctaaaaatgttggaaaattccgTCGAAATGCTAAACGGAATTTCAGAGTCGACTACAGAACAACAAAATGACAAGGACAAGCTCGATATGGAATTAAAGTTTGCCACCAGCAACGCTTCAGACTGTAATATACGACCAGcgaaaatcaatgaaaaaaaaagtaaacacaTCAAAGAACGTGTTCGTTTAGCAAAGTGCAAGCTTTGTACGGAGAGTTTCGTAAATCGAGAATCGCTGCAAGGTCACATAAACACGGTACACGCCAAGCAGAAGGTATTCAATTGCGACAACTGCGATAAATATTTCGCCAGTAGTCGCCTGTTGGAAAAACACGCGAGTACGCATTTAAAAGATAAATTGTACGGATGCAATTGTTGTAGCGAAACTTTCTGCGATAATAATGCTCTGCAAGTGCACATCTCTTTAGTGCATATAGACGAAAAGTATTTTCCTTGCGAGTTTTGctgtaaaaaatacgaatcGAAAAATAGCCTCAAGATGCACATGTTATCGCACGATGCGCCGAGTAACCACAGCTGCCCTCAGtgcaaacgaattttcaaaacgaagaaaaaaatggaaacgcACGAACGCAAACACGCCCAAGAGAAGCGATTTTTATGCTCGGTTTGCGAGAAACGTTTCACGTCGCAGTCGAAATTGGATATTCATACGAAAATTCACACAGGCGAGCGACCGTTCGGTTGCGAATATTGTCCTAAACGTTTCATCACGCGTTGGAAACAGAAATTACATACGCGAATACACACCGGCGAAAAACCATTCGCTTGTTTAACCTGTCGTAAgtgtttcatttccaaagataAACTGCAGTCGCATTTACGAGTTCACGGAGGAGTGAAATTATTCGCTTGCGAACAGTGCGACAAGAAATTCTGCACCAAAGAGCAGTTACGATTGCATACGGTCACGCATACCGGAGAAAAGGCGTTTGGTTGCGAGCTCTGCGAGAAACGCTTCATTTCTCGTTCCAAGCTGCAAATACACGTTCGTATGCACACCGGTGAAAGGCCTTTCGCCTGCGAAACTTGCGGCCGCAGTTTCATATCGAATCATAAACTGCAAACTCATTTGCGAACGCACAGCGGCGAAAAACCTTTCGAATGCGATCACTGCAACAAACGTTTCACTTCCAAAGAACTGCTGCAGTCGCACATAAACCAAACGCACTTTGGTTTGAAACCGTTCCATTGCGACACGTGCGAAAAACGCTTCGTCAGCCGATATAAACTGCAGCTACACATTCGCAGTCATACCGGCGAGAAACCGTTCGGTTGCGAGTATTGCGATAAATCTTTCGTCACACGGTACAAGCTACAAGTGCATTTGCGAATTCATACTGGCGAACGACCATTTCCTTGCTATCTGTGCGACAGATGTTTCATATCGAACGATAAACTGCAGGTACACATCAGATCGCATACCGGCGAACGTCCCTACATGTGCGAACATTGCAACAAATCGTTTATATCCAGCGACAAGCTGTTGATGCACGTACGAATCCACAACGGCGATAAACGTTTCAGCTGcgaaacttgcaaaaaaagcTTTATAACCAGATACAAATTGCAACTGCATACGAGAACCCATACGGGCGAAAAACCATTCGTATGCACCGTGTGTAGTAAAGGCTTCATTACCAACGACAAGTTGAAAGTGCATACTCGCATACATACCGGAGAGAAGCCTTATATCTGCGTATATTGCAACAAAGGATACATTACCAATTGCAAACTGCAGGTACATCTTAAAACACACACCGACGAAACCATTTTGCGAAGTGTTCATTGGCTATTGCAGtaa
- Protein Sequence
- MYRANIVGSNNEDSKPGEVYMKRTELPIYTESSPSSQSIQNNDGKRNEFVLQGVQLFRSEGCKLVRTVQSVSDRCSTFFRTGVAHATSNYATTVDYLREDRNILQRIGAIGGGVLFGNILGMRRGFIRRFLYTTSGGLTAAAICYPDKAEEYSKQSLQLSKKYVIIGYHFLNGVSKDLIGYELPTFPLKSQEPQIAAVSNTTIALDTTEKICKNFSSCDKHFASETIVKEHSLINDVSKSEPEFDSPAKRKEPLKMLENSVEMLNGISESTTEQQNDKDKLDMELKFATSNASDCNIRPAKINEKKSKHIKERVRLAKCKLCTESFVNRESLQGHINTVHAKQKVFNCDNCDKYFASSRLLEKHASTHLKDKLYGCNCCSETFCDNNALQVHISLVHIDEKYFPCEFCCKKYESKNSLKMHMLSHDAPSNHSCPQCKRIFKTKKKMETHERKHAQEKRFLCSVCEKRFTSQSKLDIHTKIHTGERPFGCEYCPKRFITRWKQKLHTRIHTGEKPFACLTCRKCFISKDKLQSHLRVHGGVKLFACEQCDKKFCTKEQLRLHTVTHTGEKAFGCELCEKRFISRSKLQIHVRMHTGERPFACETCGRSFISNHKLQTHLRTHSGEKPFECDHCNKRFTSKELLQSHINQTHFGLKPFHCDTCEKRFVSRYKLQLHIRSHTGEKPFGCEYCDKSFVTRYKLQVHLRIHTGERPFPCYLCDRCFISNDKLQVHIRSHTGERPYMCEHCNKSFISSDKLLMHVRIHNGDKRFSCETCKKSFITRYKLQLHTRTHTGEKPFVCTVCSKGFITNDKLKVHTRIHTGEKPYICVYCNKGYITNCKLQVHLKTHTDETILRSVHWLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -