Btry003856.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bactrocera tryoni
Gene Symbol
-
Assembly
GCA_016617805.2
Location
NC:74738066-74742714[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.019 1.1 9.5 0.7 1 23 382 405 382 405 0.92
2 10 0.19 11 6.3 0.5 3 16 414 427 413 429 0.91
3 10 1.1e-05 0.00067 19.6 0.2 1 23 467 489 467 489 0.98
4 10 0.0041 0.25 11.5 0.4 2 23 498 520 497 520 0.90
5 10 0.021 1.2 9.3 3.3 2 23 527 549 526 549 0.94
6 10 0.015 0.9 9.8 2.5 2 21 562 581 562 582 0.94
7 10 1.2e-05 0.00069 19.6 8.9 1 23 613 635 613 635 0.97
8 10 0.00039 0.023 14.8 0.2 3 23 642 663 640 663 0.95
9 10 0.00012 0.0071 16.4 6.9 2 23 670 691 669 691 0.97
10 10 6 3.6e+02 1.6 0.3 3 23 730 750 729 750 0.79

Sequence Information

Coding Sequence
ATGGAGCAGGTTGCACATGTAGAAGCGTGCCGCCTGTGCGCGAATTTCTATGTGACCGGTGCTGAGGTCGAATTTGTGCATCTCTTCCAACCACTGACCGGACTTGAGGAGCAGTTGCAGTTTGCGCGTACCGAATTGAACAATTGGCACTTACAGATTTCGGGCGATGATGGCTTGCCGCAGCGTATTTGTGCGAATTGTTTTACACAATTTTGTAATATATACGCATTCCGTCAGCAATGTGTGTTGGCAcaacaaaaattgttgcaaTCATTTGTGGGCGTTGGTCTGAGCGCAGACAATGCAACTACAGGCGAAGCTAAACAACAACAGACAAACACAAACGCTGATTTGACAAGCGACAGTGAGCTGCTGAATGGGTTGAAAATGGAGGCACCCGTGACCAGCGCAGAATTAATGGCCAGTTTAGATTGTTTACAAACGCCCACCACCAGCGCTGATGTGATCGCCAGCTTAGATGGCATGCAGTTGCCCGCTAGTGTGGCGGAGACGCTCTCCATGCTTACCCAGGAACTGACTACAATGCAAAATGGCACACTACTGGATAATAGCGCCAATTCCATAACCACACATGCTAATATGGACACGAAGACGGCACAAACAAATGTTTTGCAATTTAATGCAGccacaacaacacaaaacatATACTATACACCACAGACGCCAATCACCACAGTGAGCGCAGACACCAACACGCCAGCGACTTTAGTGACGACCAGTGACAGCACGCCAAAGCGTGCTACAAAATGCAGCAAAGCCAGTGATATTGATTTGGAGGAAATGCTACAGGGCAGTATTATACAGAAGAACAACAATACGTCCACAGATTTGAAGGCTGCAGCGCAAACTGACGACGCAGCAGCACAGCAGCCTTACGCCAATTATAATGAGCTCTTGGAAGATGATATGGACCTTATCTCATGCTCCGACCCCGAGGACACACACGAAATGGACGAACTCGAGGCCGATGGGGACCCCTTCACACAAACGCGCATCTCACGCAACCCATTCGCCTGTCAATACTGTTACTGCCCGAACTCCGGCTCCATCGATCACCTGGTCTTCGACAGCGCCGATGCGCTCTCGCAGCATTTCTTCGACGTGCACGACCCCAATTTGCCCTACACATGCCCGTATTGCCCGCAAAAGTACAGCTCCGTCAAGCAGCGCGACTATCATGTGCGGCTCATACACCCGACCGCCGCCAAATCCGAACACTGCAACTACTGCAAGAAGACGCTACGCTCGCCAAAGGAATTACACGAGTTCAACTGTCAATATGTAAGCAATTGGCATTGCGATACGTGCGATCAACGTTTTGTGCAAGTGCCCTTGGGTCGTTTTCGCACACATCAGCGTCACCACGCAGCCAGCAAGTTTAAATGTCGTGATTGTGCGCGCGTGTTTGTGCGTCGCGCCAATTTGGTCGCGCACGAACGTATACACCGGCCGTCAGTGCAACACGCAATACAGTGCGATCAATGTAAAGAAGTATTCTCCAACGATTATGAGGTGCGCCGCCACAAATATCAAGCGCATGATGGCGCTTTGCCGGTGCGTTGCGCCTACTGTCACAAGGGTTTTGTCAGCATGGCCTTTCTCAGTCGGCACACGCAACACTTCCACCCGGAGAAGTTGAACCACACCAATTTCGCATCGGCCACCTGCAGCAATTGCGGCTGCGCCTTCAGCTCGATACATAAATTGCGCCTGCACCTGCAGCGACCGCGTGACGAGAACGGACGCTGCATTGAGTTGGTGCGTGAAGTCGCGCCGTATCAGGAGCGCGCACGCCAGCTACGGCGGCCGCGTCTGCACTCCTGCCACCACTGCAATAAGCGCTTCTCCACACGTGCCACGCTCGAAAAACACATGACCACACATGAGGCCGTCACGTATGGCTGCAATGAGTGCACGACCACCTTTGCGAATGCCAACGAGCTAAAGCAGCATGTCATGCAGTTGCATGTGAAGCCGCGCTACCTCAAATGTGAGCACTGCGACAAGCGCTTCTGCTATATGCGCGAATTGCAACAACACCAGAAAACACACATCGCCGCGTTTGAGGACAAAACGCTGCACTGCCCCGTCTACAAGTGCGGCTTTGTGGCCTCCTGCACGCAGGAGGCACACGATCATGCCATACTCAAGCACAAGCTCGTAGCCTGCGAGTACTGCGATGGGCTCTTTGCGCGCAATCGGCTCTCAGTTCATCTTCGCACCACGCATGCCGCCCAAATTGGTGTAGCTGAAtcgaataacaataacaataatgaaGCTAGTTTGCGCAGCTCAATGGCGGCACAAAACGAAGACTCTTTGGCCGTGGCGAGCATACTCGACTCCAACACACATAACCAAAGCAATGATAACGACATTATGGTCTCATTTGAGGACAGCGCCAACAGTGGCGGCGAGAAGGTGCGCGTTGAGTTGGTGCACCAGCAGACGCCAAGTATTAGCAGTTTGGTGCTGCAAGAGCAAACGTCCAACACTTTTAAACCACTCATTCCAACGGCCGATGAAATGGAGCAGAACTTTCTAATGAACAATTTGCTGGATCCGGAACATGAGATCATAGTCACATGA
Protein Sequence
MEQVAHVEACRLCANFYVTGAEVEFVHLFQPLTGLEEQLQFARTELNNWHLQISGDDGLPQRICANCFTQFCNIYAFRQQCVLAQQKLLQSFVGVGLSADNATTGEAKQQQTNTNADLTSDSELLNGLKMEAPVTSAELMASLDCLQTPTTSADVIASLDGMQLPASVAETLSMLTQELTTMQNGTLLDNSANSITTHANMDTKTAQTNVLQFNAATTTQNIYYTPQTPITTVSADTNTPATLVTTSDSTPKRATKCSKASDIDLEEMLQGSIIQKNNNTSTDLKAAAQTDDAAAQQPYANYNELLEDDMDLISCSDPEDTHEMDELEADGDPFTQTRISRNPFACQYCYCPNSGSIDHLVFDSADALSQHFFDVHDPNLPYTCPYCPQKYSSVKQRDYHVRLIHPTAAKSEHCNYCKKTLRSPKELHEFNCQYVSNWHCDTCDQRFVQVPLGRFRTHQRHHAASKFKCRDCARVFVRRANLVAHERIHRPSVQHAIQCDQCKEVFSNDYEVRRHKYQAHDGALPVRCAYCHKGFVSMAFLSRHTQHFHPEKLNHTNFASATCSNCGCAFSSIHKLRLHLQRPRDENGRCIELVREVAPYQERARQLRRPRLHSCHHCNKRFSTRATLEKHMTTHEAVTYGCNECTTTFANANELKQHVMQLHVKPRYLKCEHCDKRFCYMRELQQHQKTHIAAFEDKTLHCPVYKCGFVASCTQEAHDHAILKHKLVACEYCDGLFARNRLSVHLRTTHAAQIGVAESNNNNNNEASLRSSMAAQNEDSLAVASILDSNTHNQSNDNDIMVSFEDSANSGGEKVRVELVHQQTPSISSLVLQEQTSNTFKPLIPTADEMEQNFLMNNLLDPEHEIIVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01563249;
90% Identity
iTF_00193130;
80% Identity
-