Btry004262.1
Basic Information
- Insect
- Bactrocera tryoni
- Gene Symbol
- -
- Assembly
- GCA_016617805.2
- Location
- NC:28806011-28809929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0031 0.18 12.0 0.1 3 23 290 311 289 311 0.94 2 11 0.062 3.7 7.8 3.4 2 23 366 387 365 387 0.97 3 11 1.4e-05 0.00085 19.3 2.1 1 23 393 416 393 416 0.96 4 11 0.066 3.9 7.8 0.8 2 23 433 453 432 453 0.95 5 11 0.0051 0.3 11.3 3.6 1 23 467 489 467 489 0.95 6 11 1e-05 0.00061 19.8 1.6 1 23 498 521 498 521 0.96 7 11 5.2e-05 0.0031 17.5 1.1 1 23 526 548 526 548 0.96 8 11 2.6e-05 0.0015 18.5 3.3 2 23 554 575 553 575 0.97 9 11 0.0052 0.31 11.2 2.3 1 23 581 603 581 603 0.97 10 11 0.00064 0.038 14.1 3.2 1 23 608 630 608 630 0.95 11 11 0.063 3.8 7.8 1.4 1 23 635 659 635 659 0.97
Sequence Information
- Coding Sequence
- ATGGTTAACCAATGTCGTGCCTGCCTCAGTTCGAAAGACACCTCCTTTATTCGTATGGAGACGCACATAGGCGATGGTGTCGATTTCTTTACTTGCTTCAGCTTATGCACACAATTGGAAGCGGAACTAGATGACGGTCTGCCAGGAGTTTTGTGCACACATTGTTCTCAAGATCTCGAAATATCTTTTAATTTCTTGCAAAATGCCAGACAGGCTGATGGAATACTGCGTGAAAGCTTTTCACACAAGTACTTGTCCGCCGAAATAGAATCATTGGATAGCGAAATGGGTGATACTATAATGGAGCCATTAGATGTGGTAGAAGGCAGTGAAATGGAAGATTGTGTGGTTGAGGAAATCATAGAACACGTACATGTTCCAGAAGATGTTGCCGAAGATCGGGAAGATAGTAGTGTTGTAGAAATAATGGAGATAGAAAAAAATGATCTGAACATTTGTGAAAGCTCTTTAGATGAGATAGAACTTATCGATAATAGTTATGTGGACCAAACTGTAGAGACGGCGGAGGTTGTGGTGGACGAGGTACATGAATCGCAACCAAAAACCACAGAGTATTATGCAGAAGATGAAGGTGACGAAGAGTACTTAAAAGAGTACAAAGAAGATGTGCAGCAATCGGACGCAGAAAATACTGGATCAAAAGGAGGAAAATGGAAATGCATAGAATGCAAACTTGTTTTGTGTGGCGACGTTTCTTATGAAGGCCATATGAATATGCACCGTTCATTGCGACCATACAAATGTACCATATGCATGTGCGCATTTCGTTGCAAAAATAAACTTGATCACCATATACAACTGCGACATACACAAGAAGTGGAGCATCAAACCACCAACCTAAACAATTGTAAAAAGTGTACCAAAATCTTCGAAGCACCCGAAGAATTACAAGAACACCAGGAATTAATACATCCCGATAGTTATCCTGTACAATGTAGACGCTGTCTGTTGTTACCACCATTCGCGCGAACAAAATTAGCGGAACACTTTCGTAACGAACATCCAGCAGAACATCGGAAATACTTTCCCACTGTGGGTAGGCCACCAAATGAACCAGCCAAACAAACACCATGGCAATGTGAAGTGTGTAAATGTTATCTGCGTTCAGAAAGTGCATTGCGTGATCACAGGCATACGCACCAGAATGAACGACCGCATGAGTGCCAATTTTGTGCGAAACGTTTTGTTACTACCAGTAATTTACGTCAACATATGCGCGGCGTACACACCGAGGAATATGAGAAGCTAGTTAATGAAGGCGGTGATACGATAGTGCAATGtgaaatgtgtaaaaagcaaTTACTTAGACGAAATCTCGAAAAACATATGGCATTACATGTGAAAAAAGAGCGCGAGGCtaaagagactcaaacgaaattTCTCTGTGCCTACTGCTCACGCGAGTGTAAAAGTCAAAAATCCCTCAACCAACACGAGAAAATGCATCAGGGCGCATCACCGGACGTTATATATATTTGCTCGGACTGTGATCGTTCCTATGCTACACAGCATTTGTTGCAGCAACATCGCAAACAAGCACACAAAGAACGAGACCACTTTTGTCCAATATGCGGCAATGCTTTTAAACTCAAGAATCAATTGGTTAATCACATgaaattgcatttggaaaaaaatatcaaatgtcCACATTGCGAGAAATGTTATGCGCGTAAATTCGATTTGGATGTGCATTTGCGTAGTCATACCGGAGAGCTGCCGTTCGCCTGTCATCTGTGTGAGAAACGTTTTGCGATAAAAGTGCGTTTAACATACCATCTACAGAAGCACTATGGCATAAAGCATCGTTGCAAGGATTGCGGTGCGGAATTCAATTCGAAACAGAAATTAAAAGCACATAGTTTCAAGCACACAGGCATGCCCTATCGTTGCGAAAGATGTGATGGGCATGGCTTTGCCAATCGGGATGTCTTTAAACGCCATTTGCAGCGCGTGCACTGCACGAGTATGAGCGACGAAGAGTTAGTTGCCATGTTCCAGCAAAACACTGGCAAGGCCACCCGCATTAAACAGGTTGAATATTTTGACGAACATTCGCAAGGGGCGGCTTTAAAAACAGCTACGGAAGCGGACAACACTTTGATTAATGCAGATGAAATTGCAATGGAATCGGAAGTGGTGCACAGCTGA
- Protein Sequence
- MVNQCRACLSSKDTSFIRMETHIGDGVDFFTCFSLCTQLEAELDDGLPGVLCTHCSQDLEISFNFLQNARQADGILRESFSHKYLSAEIESLDSEMGDTIMEPLDVVEGSEMEDCVVEEIIEHVHVPEDVAEDREDSSVVEIMEIEKNDLNICESSLDEIELIDNSYVDQTVETAEVVVDEVHESQPKTTEYYAEDEGDEEYLKEYKEDVQQSDAENTGSKGGKWKCIECKLVLCGDVSYEGHMNMHRSLRPYKCTICMCAFRCKNKLDHHIQLRHTQEVEHQTTNLNNCKKCTKIFEAPEELQEHQELIHPDSYPVQCRRCLLLPPFARTKLAEHFRNEHPAEHRKYFPTVGRPPNEPAKQTPWQCEVCKCYLRSESALRDHRHTHQNERPHECQFCAKRFVTTSNLRQHMRGVHTEEYEKLVNEGGDTIVQCEMCKKQLLRRNLEKHMALHVKKEREAKETQTKFLCAYCSRECKSQKSLNQHEKMHQGASPDVIYICSDCDRSYATQHLLQQHRKQAHKERDHFCPICGNAFKLKNQLVNHMKLHLEKNIKCPHCEKCYARKFDLDVHLRSHTGELPFACHLCEKRFAIKVRLTYHLQKHYGIKHRCKDCGAEFNSKQKLKAHSFKHTGMPYRCERCDGHGFANRDVFKRHLQRVHCTSMSDEELVAMFQQNTGKATRIKQVEYFDEHSQGAALKTATEADNTLINADEIAMESEVVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00190210;
- 90% Identity
- iTF_00190210;
- 80% Identity
- -