Btry010917.1
Basic Information
- Insect
- Bactrocera tryoni
- Gene Symbol
- -
- Assembly
- GCA_016617805.2
- Location
- NC:25753165-25756534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.1 4.2e+02 1.4 1.2 2 19 76 93 75 98 0.86 2 20 0.41 24 5.3 0.0 1 23 105 130 105 130 0.92 3 20 0.011 0.66 10.2 2.4 2 19 141 158 141 161 0.93 4 20 8.5 5e+02 1.1 2.9 2 22 173 193 173 194 0.78 5 20 0.01 0.62 10.3 0.3 2 23 202 224 201 224 0.94 6 20 0.00033 0.02 15.0 0.1 3 23 232 252 230 252 0.96 7 20 0.0002 0.012 15.7 1.6 1 23 258 281 258 281 0.91 8 20 0.0022 0.13 12.4 0.2 1 23 286 308 286 308 0.97 9 20 1.4 82 3.6 0.3 1 20 317 336 317 337 0.87 10 20 0.00069 0.041 14.0 2.2 1 23 357 381 357 381 0.91 11 20 0.1 6.1 7.2 0.1 1 23 386 408 386 408 0.96 12 20 0.00091 0.054 13.6 0.2 2 23 425 449 424 449 0.92 13 20 0.0057 0.34 11.1 0.2 2 21 453 472 453 473 0.95 14 20 0.0056 0.33 11.1 0.9 2 23 480 502 479 502 0.94 15 20 0.0029 0.18 12.0 0.2 2 23 508 530 507 530 0.94 16 20 0.015 0.92 9.8 0.8 3 23 535 556 534 556 0.96 17 20 0.066 3.9 7.8 4.5 1 23 562 585 562 585 0.88 18 20 0.0012 0.074 13.2 0.9 1 23 590 612 590 612 0.98 19 20 4.4e-07 2.6e-05 24.0 3.7 1 23 618 640 618 640 0.99 20 20 0.0054 0.32 11.2 0.1 1 23 646 674 646 674 0.86
Sequence Information
- Coding Sequence
- ATGAGTGAATTAAATAGTGAGGATGATGTATTTTTCGACGAACTAATAGAAGATGAAAATGCCGATGACGAATCTTTACCAAACTTTGCGTTTCCAAATCTCAAAGGTGATCCTGATTTGCTTTGTGAATTCAATACCAATGATGAGAACACAATTGGTACTAGTGAATATTTGGACCAAGCCATCATAAGCAATTTAAGCACATTGGAATTCAAATGGAATAGTGAATGCTTGatttgTACGGAGCAATTTGAGGAGTACCAGGAATTGCTGGAGCATTGCAAACAGTTCCATAAAAATGAGTTCGATGAGTACACATGCACCGTCGGAGATTGTGATGAGTTAATTGCGGATGAGGATGCGCTTGCCAGGCACTTGGTATTGAGACACAGTGATTTGCAGAGtatCAAAATATATGGCAGCTGTCCGTTTTGTGATCTACGTTTTTCCAACTTTAATGAACTTAATAAACATTCATGCTATCGTAAAATTAATAGAAGGGCTTGCATACAGCCTTATTGCCAATATTGTAAGGAGGAGTTTGTCTCGCATAAAAGATTCCTGTTTCACCTGCAATTTCATTTGGCTAAGCGGCGAGCCAAGGTTTGCATGATATGTAACACCGAATTTTCCgatgtggaaaactttttcctaCATGTAAATTATCAGCACGAATCACTGAATAAGTTGGCATGCAAAATCTGTGATCGCGTTTTTGCTGATTTGGAGACATACAGCGCACATGAAAACATGCACAAATCAAATCCGAAATACAAATGTGATGAATGcagcaaagtttattataataAGAAATTACTACTAAAACACAAGGTTAATTTGCATTCCGCAATTGAGTATAAATGCGACTTGTGTCCGAAAATATTTCCAACTTTCCCTATTTTACAAAATCACTTGAAGTGGCATAATACAGAAGCTGAAGTCCACGTATATACTTGCACTAATTGTGGCTTGCTTGCAGGTGATTGTGTCAAACTACAGAAACATACCGCAGATTGCTCCTCAGACTGCTTCGAATGCGAAATTGAAGATGAAATATTGACAGCGGCTTACAGCTGTCATTACTGCGCGCAAGATTTCAAGGATAAATTTTCGCTCAGCAAGCATCGTGCTACGGGCATACATAAAAGTGAGAAATTCATCTGTCCCATTTgcaatgaagagcttgacagtGTAAAAGCAAAGCGCTTGCATATGTATAcgcataaaaattataaaaatttcctaGAAAATCTACCACTTAAGCGCCTTCTAATGTGTGATGTGGGCgATTGCGAAGAGTGCTATAGTGACTGGGCTGCCTTGCAGCGGCACAAAACGCGCATACACAAATCAAATACATGCACAAAATGCAATCAAAAGTTAGCTGATGCAGCGGAACTGCAAAAGCATTTGAAGCAATGCCAAGCGACTGCATTAACATGTCAGTTTTGTGATAAAATATGCCCAACAAAAATGTCACTAGCTGTCCATGTAGCTAGAAGGCATAATAACAAAAATGTTGTCTGTCCACACTGTTCCGTCGGCTATAAAGATGAGCAAACCCTACAACAACACATAGAATATTCACACGTGCCTGCGCCTTGTACGAATTGCGAAAAAGTGATCAATTGCAAACGGAATTTAGAGATTCATATGCGTGTGGTGCATGACACAGAAACCAGATATTTCTGTACGCACTGCAATAAAGGATTTTATCATCGTTCGCAGAGAGATCTGCATGAAGAGAGTGTGCATCCAGACTCGATCTACAAATGCGGTCAATGTAATTTCAAAACGAAATATGCCAAGTCTTTGGAAATACACATAGCGAAGCATTTGAAAAAGCTGGAGTTTAAGTGTCCGCACTGTGATAAATCATTTGGTCGCAAAAACACGCTCACTTTACACATCAAGCGACATAAAAATGACAAGCCTTTTAGATGCTTCGATACCATTGTTGATGGCTGTGACGCAGCTTTCATCACACGTCCGCTGTTAAATAATCACATTAAAAGCAAACATTCCGTGCATCAGGTTAAGCCGAAGAGCGCGAGCGAACAAAAGCGGCGACTTGGAACGCAAAGAAAGTCGTGTATAAAGGAAATTGTTACGCAGGAGGCACCCTTTGAAAATACGGCAATGCTCGAAATCAACTCAAGTGGTACAATGTTGACTGCAGATAGCAGCTTTGCCGATGTTGCGGGTTTGTCACACGCAGTTGATGAGAATTACATGTTGCTCGTGGTGAATGATGAGCAACTGTTGGCACTGGACGGCACAGATATTTCAGCAAGTTAA
- Protein Sequence
- MSELNSEDDVFFDELIEDENADDESLPNFAFPNLKGDPDLLCEFNTNDENTIGTSEYLDQAIISNLSTLEFKWNSECLICTEQFEEYQELLEHCKQFHKNEFDEYTCTVGDCDELIADEDALARHLVLRHSDLQSIKIYGSCPFCDLRFSNFNELNKHSCYRKINRRACIQPYCQYCKEEFVSHKRFLFHLQFHLAKRRAKVCMICNTEFSDVENFFLHVNYQHESLNKLACKICDRVFADLETYSAHENMHKSNPKYKCDECSKVYYNKKLLLKHKVNLHSAIEYKCDLCPKIFPTFPILQNHLKWHNTEAEVHVYTCTNCGLLAGDCVKLQKHTADCSSDCFECEIEDEILTAAYSCHYCAQDFKDKFSLSKHRATGIHKSEKFICPICNEELDSVKAKRLHMYTHKNYKNFLENLPLKRLLMCDVGDCEECYSDWAALQRHKTRIHKSNTCTKCNQKLADAAELQKHLKQCQATALTCQFCDKICPTKMSLAVHVARRHNNKNVVCPHCSVGYKDEQTLQQHIEYSHVPAPCTNCEKVINCKRNLEIHMRVVHDTETRYFCTHCNKGFYHRSQRDLHEESVHPDSIYKCGQCNFKTKYAKSLEIHIAKHLKKLEFKCPHCDKSFGRKNTLTLHIKRHKNDKPFRCFDTIVDGCDAAFITRPLLNNHIKSKHSVHQVKPKSASEQKRRLGTQRKSCIKEIVTQEAPFENTAMLEINSSGTMLTADSSFADVAGLSHAVDENYMLLVVNDEQLLALDGTDISAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192963;
- 90% Identity
- iTF_00190118;
- 80% Identity
- -