Basic Information

Insect: Bactrocera oleae
Gene Symbol: topi
Assembly: GCA_001188975.4
Location: LGAM02007670.1:1797492-1801187[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.1e-05 0.0027 18.3 2.6 1 23 169 191 169 191 0.97

2 10 0.0075 0.64 10.8 1.1 2 23 226 247 225 247 0.97

3 10 0.034 3 8.7 0.1 2 19 309 326 308 328 0.94

4 10 0.03 2.5 8.9 1.6 1 22 377 398 377 401 0.90

5 10 1.1 98 3.9 0.3 2 20 416 434 415 438 0.76

6 10 1e-06 8.6e-05 23.0 2.3 1 23 458 480 458 480 0.95

7 10 0.0023 0.2 12.4 1.1 1 23 486 511 486 511 0.95

8 10 0.34 30 5.6 1.7 1 23 517 539 517 539 0.88

9 10 2.9e-08 2.5e-06 27.8 0.4 1 23 545 567 545 567 0.99

10 10 0.033 2.9 8.7 1.4 3 23 575 596 573 596 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.1e-05	0.0027	18.3	2.6	1	23	169	191	169	191	0.97
2	10	0.0075	0.64	10.8	1.1	2	23	226	247	225	247	0.97
3	10	0.034	3	8.7	0.1	2	19	309	326	308	328	0.94
4	10	0.03	2.5	8.9	1.6	1	22	377	398	377	401	0.90
5	10	1.1	98	3.9	0.3	2	20	416	434	415	438	0.76
6	10	1e-06	8.6e-05	23.0	2.3	1	23	458	480	458	480	0.95
7	10	0.0023	0.2	12.4	1.1	1	23	486	511	486	511	0.95
8	10	0.34	30	5.6	1.7	1	23	517	539	517	539	0.88
9	10	2.9e-08	2.5e-06	27.8	0.4	1	23	545	567	545	567	0.99
10	10	0.033	2.9	8.7	1.4	3	23	575	596	573	596	0.95

Sequence Information

Coding Sequence: ATGGTTAatgaaacaataaaacaaacaacaacagagTCATTTGATGCAACAGAAGAAGAATTAAAACTTCTGAAATTTCTGGAGACGCAACCACAAAGTAGTCCACTTGatactaaattatatattccacccgatgttccctcatcggcTTATCGAATTGTGAAATGTTCTAATTGCAACTGCCTCTTTGACATCATATCTTTTCAATCTCATATTTGTGATTACGATGAACACCATAATCTAATCATTCCCCCCGCTGCATCTACACCTATTAATAAACCTATCAAAGAAGAACCACTATTGCCACCGGAACCGGCATGCATTCGGTTATTGCGCGAAAATCAGATACGCATTCGGCGCTTCTTGAAAGATGAACTCAAATATGACGTTAATGCATCAATAAATAACAATACAGGCAATTCCAGTGGTACTTTAGGTAATACATCAAACACATCGACAGGCTCGAATTCATCGAATACTGCTACCAAAAAGCAGGATGGGCCTCATGAGTGTACACTATGCGAGCGTAAGTTCGTGCATGCATCAGGTCTTTTGCGGCATATGGAGAAACATGCAATGGATCTAATACCAACACCAGGCGCTTCTTCGGGGGGTAAAACGACTACATCACAAAGTAGCTCCTTACAGAGTGTTAATGGACTGCGAGTTGTCATTAAGTGTACTTTATGTGGAAGAGTATTCTTTGAGCCATTTGCtgcctttaaacatttatgtTCTCACTTTCCCGGAAGTATGCAGGAAGAAAAAGAATTCGATAATTGCGCAGAAATTCCGTATGAATCCTATGTAGACGACGCTATGAGTTTTTTGAAGATGgagACCAATAACTGTGCGGGGCCACTAACAGTTCATGGAGATAAATCACCTGTTTACCTCAAAATGGTCATTTTAAGTTGCATTTTGCAGTGtgaattttgtgattttgttttCTCAGAAGtatcttatttatttgtacattCTGCTTGCCATTTGCCTGAACGACGTTTCGAGTGCTTCTCATGTGATATTCATATGCGCACGTCTAAAGAAATATGTGCGCATTGGCAAGCTGAGTGTGTATTTATGCGAGAGAATCTTAAGGTGCATCAAGCTTCTACACAGCGTTACTTTGTGTGTAATGTTTGTGAGAATAAGTTTCAATCTCTTGATCAGTTGCATGAGCATAGATATACAGCTTATCATTTCTTTCCTCGTTTGAATAAATGCCTGGGTGTTCTACAGCTACCTTGTGAATATTGTGATGTAGTATTTGAGTTTGCGCAAGAATGTGTGGCCCATTATGAAGAAAAGCATTATAAGAAGTATAAACGCGATAAAGATGGAACTGGTTCATCCAGCAAAACCCGCCAATACTTATGTGACATGTGTGGGAAATCGTATACCCAATCCAGCCACTTATGGCAACATTTGCGCTTTCATCAAGGGGTAAAACCCTTTGCTTGCAAGGAGCCCGGTTGTACACGTAAATTTACCATTCGTCCCGACTTGAATGATCACATACGCAAGTGTCATACTGGTGAACGTCCTTATCATTGTTTGGTGTGCGGCAAACGTTTCTTAACTGGCTCGGTTTTCTACCAGCATCGTCTTATACATCGCGGCGAGCGACGTTATGAATGTGAAGAGTGTGGTAAACGTTTTTATCGTGCAGATGCGCTTAAAAATCACCAACGCATCCATACTGGTGAAAAACCATTTGGTTGTCTGTTTTGTACAAAGAATTTTCGTCAACGCGGCGATCGTGACAAGCATATAAGAGCTAGGCATTCGCACTTGGATGCGAACGCTCGTTTAATGatgcaaatgcaaaaattacaGTTGGAAGCAGCGGCAGCTGCGGCTGCAGCTCAGGTAGTCGTTCAACAGCAGCATGTCAATAATGCTGGCATTATGAGTGGCATACCCACTGTAACACCAACTCTTATGAGTATGCCATCTGTAAACAATGATGTAATTGATGGTCTAGAACCGTCATTAGATCCGAATGAAGTTGTGATGATCGGAAATGTAGCCTTTCCAAAAAGTATGTTTGAATCCATAATTCCAGACATTGATGAAGAGTCTGCACTTAGAGCCATGGAGCAGTTGCAATAG
Protein Sequence: MVNETIKQTTTESFDATEEELKLLKFLETQPQSSPLDTKLYIPPDVPSSAYRIVKCSNCNCLFDIISFQSHICDYDEHHNLIIPPAASTPINKPIKEEPLLPPEPACIRLLRENQIRIRRFLKDELKYDVNASINNNTGNSSGTLGNTSNTSTGSNSSNTATKKQDGPHECTLCERKFVHASGLLRHMEKHAMDLIPTPGASSGGKTTTSQSSSLQSVNGLRVVIKCTLCGRVFFEPFAAFKHLCSHFPGSMQEEKEFDNCAEIPYESYVDDAMSFLKMETNNCAGPLTVHGDKSPVYLKMVILSCILQCEFCDFVFSEVSYLFVHSACHLPERRFECFSCDIHMRTSKEICAHWQAECVFMRENLKVHQASTQRYFVCNVCENKFQSLDQLHEHRYTAYHFFPRLNKCLGVLQLPCEYCDVVFEFAQECVAHYEEKHYKKYKRDKDGTGSSSKTRQYLCDMCGKSYTQSSHLWQHLRFHQGVKPFACKEPGCTRKFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPFGCLFCTKNFRQRGDRDKHIRARHSHLDANARLMMQMQKLQLEAAAAAAAAQVVVQQQHVNNAGIMSGIPTVTPTLMSMPSVNNDVIDGLEPSLDPNEVVMIGNVAFPKSMFESIIPDIDEESALRAMEQLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00081676;
90% Identity: iTF_01563225;
80% Identity: -