Bole014730.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- L
- Assembly
- GCA_001188975.4
- Location
- LGAM02025756.1:143175-163505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8e-05 0.0015 19.1 1.7 1 23 186 208 186 208 0.98 2 18 0.41 35 5.3 5.7 1 23 214 236 214 236 0.98 3 18 2.2e-07 1.9e-05 25.0 3.1 1 23 242 264 242 264 0.99 4 18 1.8e-05 0.0016 19.0 0.2 1 23 270 292 270 292 0.98 5 18 0.54 47 4.9 1.0 2 23 357 380 356 380 0.87 6 18 0.0022 0.19 12.4 0.1 2 23 409 431 408 431 0.95 7 18 0.037 3.2 8.6 1.0 1 23 522 544 522 544 0.97 8 18 2.7 2.3e+02 2.7 2.0 2 23 552 573 551 573 0.91 9 18 0.023 1.9 9.3 0.3 1 23 581 606 581 606 0.91 10 18 1.3 1.1e+02 3.7 0.1 1 19 611 629 611 631 0.90 11 18 3.1 2.6e+02 2.6 1.5 1 23 641 663 641 664 0.95 12 18 0.00016 0.014 16.0 1.2 1 23 701 723 701 724 0.96 13 18 1.5 1.3e+02 3.5 0.2 1 23 895 919 895 919 0.88 14 18 0.0017 0.15 12.8 4.7 2 23 928 950 927 950 0.97 15 18 0.039 3.4 8.5 0.1 1 23 956 978 956 978 0.92 16 18 0.64 55 4.7 0.7 2 23 986 1007 985 1007 0.95 17 18 0.25 22 6.0 1.8 1 23 1136 1158 1136 1158 0.95 18 18 0.0037 0.32 11.7 2.9 1 23 1165 1187 1165 1187 0.98
Sequence Information
- Coding Sequence
- ATGGCCGTAAAGATGCTCTATCGAGGACCAAGTTCAagacttgaaaatttaattgaaaagatACAGGCTACAAAGGAAATTGGAACTACAGatATGTACTCGACGCATACATCTTCAAACTATTCACCATCTGTGTCGGATGGCACATTAACACCAAATTCATTACAAAATCATGAACACACAACACCACATCTTGCTCAATTACAAACTATGCAATACTTTCCGCAGCAGCGTTCGGACGGAGATGTTAGTCGCAACGAAAATCAAACGAAACGAGTTAATATTGACGGAGACGAAGTGAAAGGTAATGAAGATCCCAAACCAGCAAAAGAAAGCTCTGCAGAAACATTTAACACAACTAAACTTGAAGAAGGCAATATTAACTCAGATATGCAACACAAACGACAAGCGCGCCTTCATCGGCAGCACCTTTACCACCATGGAGAGTATCATACTGCGAAGCTTGTTACAAAACTGAGAAAAATTGAAAGAGTCGCGACAAAGTTTGATAAGTTGACAGGAAATGGCATTAAGGGAAGCAACGTTGATGGGTCTTATCAATGTCAGTTCTGTGAAAAATCATTTCCGCGGCTtgggtatttaaaaaaacacgAACAGagTCATGCTGAACATCTACCTTTTAAATGTGAATATTGCGCTAGACTTTTTAAACACAAGAGGTCTAGAGATCGCCACACCAAGCTGCACACTGGGGATCGACGTTACCGTTGTCCACACTGTGAGGCAGCTTTCTCTCGAagtgatCATCTAAAAATCCATATGAAAACCCACGATAATCAAAAACCATTCCAATGCACGGTATGCAATCGTGGTTATAATACAGCTGCAGCATTAACTTCGCATATGCAAAATCACAAGAAACAGGCAGCCATTTTATCGGCAGGGGGAACCCCTCAAGTTCTTAATTACAGTCCTCGATCTAGTGGATCTGTATCAAGTTGTGGAAGTTTACATAAAAGTCGCCATGGCGCATCATTAGTTCCTGGTGACAGTAGTAAAACAAATCGAATGGACATTCCGAAACGACCAAACACAGTCAATCTTCTGACATGTAATTATTGCTCCAAATCCAAGTTTAATTCTATCGAGCAACTCAATGAACATATTAGCTCGAAACATAGCCAAGATATATTTTCCCCACAAAAACCGACTACACAGCTTGCTTTAAATGACGCAATTTCGGATATAAACCCGTTCCAGCTAAGTTGCGAATATTGCACTAGAGAGTTTGGAAGTCTTCCCGCTTTATTTCAACATATACGCCTCGCACATGTCGATCGATTAGCCAGTCCCAATTCTTATTTTGAACATTTCAATCGTTTGGCTGCATCAGGGACTTTTAGTCCTCGTTTTGTGAATGACAAAACAATTGGAAGGGAAGACAACGTACTAAATGAAAGTAATATAAAGCAAGAGCCACTTTTGCCTTCGGCAAATATCCATGCTGAAAAACCAGAGGATGAACCCACTGATCTTAGTCAAAATAACCGACGTTCATCAACTGCGCTGCTACAGCCAGAAGAGTCTCTCCAGCCAgatatgtttttttgtaatcaaTGTAATGCTGGATTACCAGATTTTGATAAGTTTCGAAACCACTTAAAAACACATATAACGCAGGACTTAAACCTTATTTGTCACCATTGTGGTTTGGCTTTACAAGAACAATCGGAACACGAACGGCATGTAATTTCACATTATTTAATATCAAGTTCTGAATATATTTGTGCAGGCAACAAGTGCGACAAATCTCATTCAAACCTAGAGGAACTTCAAGCTCACATGCTGGAGCAGCACGCAATCCCTATGTTCAAGTGTTCTGTGTGCTCCGAACTATTTGAGTCCAAAATGGCAATTCAGATGCATTTTGCTTGTACACATTCCATTGAAACTAAAATATTCCGTTGCTCAGCATGTATGGAAGTGTTTCGAATTGAAAATGAGTTCAGTTCGCACGTCAAATCGCATCATCCTGGTATTAATGGGCCGATACCCAATTCCCTTCAATGCATGTTTTGCCGCACTATCTGCTCAACTGAATTAGAGATGCATTTTCATTTAGCCGCACATGCTCGCCAATTCCAGTGTCCTTCCTGCCCGGAAACCTTTAATGTAGAATTTCTATTAGATCGACATATGCAAAGACATCACACAGACAATAAGCGGGCAACATTGTCTTCGAACGAAACATACGAAGAGGTATCAACATCATCAAATATGCCGAGTCAAATGAACTCTCTATATATGAACTCCTTAATAAGCAAAGCGCCACAAATGCCGATTTCTTCGCAAAATAACAACACTAGCGTTCTTGACTACAATATTGCATTTGCGGCGCATCTTAATAAAAGCATTTTCCATGGTCCCAATGCGGCTGCAACAACATTGGCCGATGGCAAGTTTTACAATGCATTGCAAGTCGATACTGGTACCGTGAAACAACCCAGACTCATGTACGGCCTTAGTCGACGATATTTTGACACAAGCCGAACATTAATAGAGATGTATGCTCAGCATAGAATAGAGAAACCAAAcactatggaaaacttttacaaCAACCCAAAACCACAACATTTAAAACCTCAAGCAGATTTAAATCGAATTCGGTCACCAGTAGAGTCAATAATTCCAACTTCCCTTGCTTCGCACTCTTCAATGGGGTATAGCTGTGATATTTGCGAacgcaatgatttccgatcagaAGGCGAAGTTAATTCTCATCGAAAAATCGTTCATAATATAAAAACGGGTGTTAGTCTGCGCTGCGCTTATTGCTCAGGAAATTTTAAGTCACGAACTGAGTTGGAACATCACATGAGAACTTGTCATAATTCTACAGGGAAACATAAATGTCTTATTTGCGATGAAGTTTTCCCTTCGCCAGCTATATTGGCAGAGCACAAATTGCAACATTCTAAGGTTGGTCAATGCGGAAAATGTTCACACTGCAGCAAACTATTGGACGATGTTACAGCGTTTAAAGCACATCTCAGTGAGCACAACAATGAAAGTCAGCTTCCCATGCATTGTATCTGCTGCCGACAATCGCTCCACTCTGATTTTGAAATCAGTTTACATGCTCAattcCATACTAAATCTTCGAACGTTACAGAAAGTGTATGTGCCCTTTGCTTAGAATCTATTCCGAACCCAATTAACGGAGAAGCAAAAGTTTGTGACAAGTGCTGCCGCAAACACAAGCTTGGCGCAAATTTTAAGGGCCAACGCTTACGTAACGCCCTTTACGAACAGGGTCCCGAAGCTTTCCGAAGTTCATTAAAGGTTGAAAGTCGTTGTAATATCTGCAAATTGATTCTACCATGCACCCAAAAACTCCAAGAACATCTGGTCGAACACACTTTTGCTGGTTGTGAAGAACGGGGCTTTAATTGTTACATATGCTCTGCTGTGTTTACAGCTCCAAGTAGTTTGCTATGCCACATGCATGAGCATGGACTGCAAAGCAGGCCCTACGACTGTAATCTATGTAGCGAAAAGTTCTTTTTCCGAACGGAACTTGAGCACCATTTACTGACCCATGAGAAGCAGAACCTGCTTGagtccaaaaataaaaaaaattgtacgaaCAAATTTTCGTTTCTTAAAGAAGTCGATGACTCTGCGTCCTATCTGACAGAAGTTAAAAAGGAAATACTCCCGGTTGATGATAAAATCACATTAGGCGAAGAGGACGAGTACATCGAAATAGAAAATGTTACTGATGTCTATCAGACATATAATAATGCAAAACCAACTTTTGTCACTCATAAAGAAAGCCTACCAATGGAAGAATTAAACCAAAAGTGTGCCGAAGAAAACagtgtttaa
- Protein Sequence
- MAVKMLYRGPSSRLENLIEKIQATKEIGTTDMYSTHTSSNYSPSVSDGTLTPNSLQNHEHTTPHLAQLQTMQYFPQQRSDGDVSRNENQTKRVNIDGDEVKGNEDPKPAKESSAETFNTTKLEEGNINSDMQHKRQARLHRQHLYHHGEYHTAKLVTKLRKIERVATKFDKLTGNGIKGSNVDGSYQCQFCEKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAAILSAGGTPQVLNYSPRSSGSVSSCGSLHKSRHGASLVPGDSSKTNRMDIPKRPNTVNLLTCNYCSKSKFNSIEQLNEHISSKHSQDIFSPQKPTTQLALNDAISDINPFQLSCEYCTREFGSLPALFQHIRLAHVDRLASPNSYFEHFNRLAASGTFSPRFVNDKTIGREDNVLNESNIKQEPLLPSANIHAEKPEDEPTDLSQNNRRSSTALLQPEESLQPDMFFCNQCNAGLPDFDKFRNHLKTHITQDLNLICHHCGLALQEQSEHERHVISHYLISSSEYICAGNKCDKSHSNLEELQAHMLEQHAIPMFKCSVCSELFESKMAIQMHFACTHSIETKIFRCSACMEVFRIENEFSSHVKSHHPGINGPIPNSLQCMFCRTICSTELEMHFHLAAHARQFQCPSCPETFNVEFLLDRHMQRHHTDNKRATLSSNETYEEVSTSSNMPSQMNSLYMNSLISKAPQMPISSQNNNTSVLDYNIAFAAHLNKSIFHGPNAAATTLADGKFYNALQVDTGTVKQPRLMYGLSRRYFDTSRTLIEMYAQHRIEKPNTMENFYNNPKPQHLKPQADLNRIRSPVESIIPTSLASHSSMGYSCDICERNDFRSEGEVNSHRKIVHNIKTGVSLRCAYCSGNFKSRTELEHHMRTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQCGKCSHCSKLLDDVTAFKAHLSEHNNESQLPMHCICCRQSLHSDFEISLHAQFHTKSSNVTESVCALCLESIPNPINGEAKVCDKCCRKHKLGANFKGQRLRNALYEQGPEAFRSSLKVESRCNICKLILPCTQKLQEHLVEHTFAGCEERGFNCYICSAVFTAPSSLLCHMHEHGLQSRPYDCNLCSEKFFFRTELEHHLLTHEKQNLLESKNKKNCTNKFSFLKEVDDSASYLTEVKKEILPVDDKITLGEEDEYIEIENVTDVYQTYNNAKPTFVTHKESLPMEELNQKCAEENSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01563182;
- 90% Identity
- -
- 80% Identity
- -