Basic Information

Insect: Bactrocera oleae
Gene Symbol: grau
Assembly: GCA_001188975.4
Location: LGAM02021877.1:4532608-4535076[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.23 20 6.1 0.3 2 23 283 305 282 305 0.87

2 10 0.13 11 6.9 1.0 6 23 314 331 306 331 0.95

3 10 0.0015 0.13 13.0 3.7 1 23 337 360 337 360 0.95

4 10 3.2e-05 0.0028 18.2 0.9 1 23 368 390 368 390 0.98

5 10 3.4e-05 0.0029 18.2 0.9 1 23 395 418 395 418 0.96

6 10 0.15 13 6.7 0.1 2 23 425 446 424 446 0.95

7 10 4.4 3.8e+02 2.1 5.9 2 23 455 476 454 476 0.90

8 10 2.8e-05 0.0024 18.4 0.2 1 23 483 506 483 506 0.96

9 10 6.3e-06 0.00055 20.4 0.7 1 23 512 534 512 534 0.98

10 10 2e-05 0.0017 18.9 4.9 1 23 540 563 540 563 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.23	20	6.1	0.3	2	23	283	305	282	305	0.87
2	10	0.13	11	6.9	1.0	6	23	314	331	306	331	0.95
3	10	0.0015	0.13	13.0	3.7	1	23	337	360	337	360	0.95
4	10	3.2e-05	0.0028	18.2	0.9	1	23	368	390	368	390	0.98
5	10	3.4e-05	0.0029	18.2	0.9	1	23	395	418	395	418	0.96
6	10	0.15	13	6.7	0.1	2	23	425	446	424	446	0.95
7	10	4.4	3.8e+02	2.1	5.9	2	23	455	476	454	476	0.90
8	10	2.8e-05	0.0024	18.4	0.2	1	23	483	506	483	506	0.96
9	10	6.3e-06	0.00055	20.4	0.7	1	23	512	534	512	534	0.98
10	10	2e-05	0.0017	18.9	4.9	1	23	540	563	540	563	0.97

Sequence Information

Coding Sequence: atgatttgtAGATTGTGTCTGAAGCATTTTAAagatgtaattaatatttttgacgaGATAGGGATTGAATTAAATGTTGCTGCTGTACTTGCTAAATACTTCTGGTTCGAGCCAAGAAGTGATGATCCTATATCTACTGCAATATGCAATTCGTGTTGGATTAGCGTTTCCAATTTCAATGAGTTTTACTTAGGTGTGGAGGAAGCTCATAGGCTATTAACAGAACGATTTTCTTTAAAGACCGATATAGAGCCCAATTGCCGTAAAAGGCGTAACTATTCAATAACCGAGGAAAAAGATGTCAATGCATGGTTAGATCAAAATTTGTCAACTACAATTCCCAAAAATGACTTTAGTAATGATGATGAATTAATAAACAATAGACAAAATATCTGTACGCTCGACAAACCTGCTGTCAAAGGTTTAAACTGTGTTGAACCGAAAGAATTGAATGGTGAACAGTCACTAGATGGTGATGAGCCTTACATAAATAGTGAATCATTTATGGAGGAAGTTATGGGTATAGTTGAAGAAAGCGAAGACGCACTTGCCTTACCGCTAGAACGGCAGCTACGTTCCACTCGCTCTAAAACAAAGAATTTTTTAGAGCCTAGCAAAAGCATTTCAGATTGCGGATCGAAAATAATAGGCAATGAATGCCAAAAGACAGATCTTGGAAAAAGAAAACGTCGGGGTCGACCAcctaaaattaaaagtgaaaaaaaggaTAAAAAAGGAAGAACGAAATCTAAAATTGACACAAATGAAGAAGATGATTCGCAACAGGAAAGCTATGAGGAACGGATGCGTCAAATTGATGAAAAAATCGCGCAATGTATACGTTTAGTATGTGATATTTGTGCAACGGAACAACAGACATTTTCTCAATTAAGAAAACATATGGAGAAAATTCATCAATGTAAAGGTTACGCAACTTGCTGCaataaaaagttcaataaaCGAGCGCTTCTGGTAGGGCATATAGAAAAACATATTAATCCGGATTGTTATAGATGTGAGTCTTGCGACAAAACATTTGCCGATAAACAATGTATGCGTAACCATTTCTTGATCAAACACCAGCCGGAAGAAGAAAAGCAGTATCAATGTGAACACTGCCCGAAACGGTTTGCACGTCCATATATTCTTGAACAACATCGCCTTATTCATGAAGAACGTAGTCACATTTGTGATATCTGCAAAAGAGGGTTTGCATCAGCCAACATGTTGAGCACACATATGAAAACAATGCATTCGAGTTATGGTGCCACTATGTGTGATGTTTGTGCGAAGGTCATAAGGGGGCGCACAGCCTTTGCTCGACATCAATTGGAGCACTCTGGTATTGTTTTGCCGAAAGTTCAATGCGAAAAATGTGGATCATGGCATAAAGATAAATATAGTTTGCAGAAACATAAGCGACGTCATAACGATGATGGCACCTTACACGTTTGTAGTATTTGCGGAAAGGTGGCGCCAAATCGAAGCGCGCTACTCAGTCATCAACGTTATGTTCATAAATCTGAACGTGTTTTCGAGTGTAGTGTTTGCAAGAAGGCTTTCAAAAAGGCCATATCTTTAAAGGAACATATGACCATGCATACAGGCGAGGTGTTATATAGTTGCCCACACTGTCCTAAAACATTTAATTCTAATGCAAATATGCATTCACATCGTAAGAAAATGCATCCTAAGGAGTTCGAAGAGACTCGCAAACAGCGGCGTGAAAATGCTGCGAAACCGGATGCTTATGTCGAGAAGATAGATAAAGACAAAGTAGCCgaaataaaatcttcaaaagAGCAAAATGTTACAGAAGTCGATATCAGCAGTGAGGACGATAATATGCCACAAGTAATTATGATTAAATCAGACGATGGAAGAGAAACACACAACATTTTAGTGACAACAGAAGGTTTCAGTGATAACGAAGATGTGAATCCGAATgataatagtataatttttacaataaattag
Protein Sequence: MICRLCLKHFKDVINIFDEIGIELNVAAVLAKYFWFEPRSDDPISTAICNSCWISVSNFNEFYLGVEEAHRLLTERFSLKTDIEPNCRKRRNYSITEEKDVNAWLDQNLSTTIPKNDFSNDDELINNRQNICTLDKPAVKGLNCVEPKELNGEQSLDGDEPYINSESFMEEVMGIVEESEDALALPLERQLRSTRSKTKNFLEPSKSISDCGSKIIGNECQKTDLGKRKRRGRPPKIKSEKKDKKGRTKSKIDTNEEDDSQQESYEERMRQIDEKIAQCIRLVCDICATEQQTFSQLRKHMEKIHQCKGYATCCNKKFNKRALLVGHIEKHINPDCYRCESCDKTFADKQCMRNHFLIKHQPEEEKQYQCEHCPKRFARPYILEQHRLIHEERSHICDICKRGFASANMLSTHMKTMHSSYGATMCDVCAKVIRGRTAFARHQLEHSGIVLPKVQCEKCGSWHKDKYSLQKHKRRHNDDGTLHVCSICGKVAPNRSALLSHQRYVHKSERVFECSVCKKAFKKAISLKEHMTMHTGEVLYSCPHCPKTFNSNANMHSHRKKMHPKEFEETRKQRRENAAKPDAYVEKIDKDKVAEIKSSKEQNVTEVDISSEDDNMPQVIMIKSDDGRETHNILVTTEGFSDNEDVNPNDNSIIFTIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00192316;
90% Identity: iTF_00190906;
80% Identity: -