Bole001611.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02025750.1:360624-362536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.25 22 6.0 0.3 2 23 256 278 255 278 0.93 2 10 2.5 2.2e+02 2.8 3.8 6 23 288 305 288 305 0.98 3 10 9.2e-05 0.0079 16.8 0.4 1 23 311 334 311 334 0.98 4 10 0.00049 0.042 14.5 1.2 1 23 343 365 343 365 0.98 5 10 6.9e-05 0.0059 17.2 0.4 1 23 372 395 372 395 0.96 6 10 2e-05 0.0017 18.9 0.3 2 23 402 423 401 423 0.95 7 10 0.031 2.7 8.8 3.7 2 23 432 454 431 455 0.95 8 10 0.0079 0.69 10.7 0.1 1 23 461 484 461 484 0.96 9 10 4.2e-05 0.0036 17.9 2.1 1 23 490 512 490 512 0.98 10 10 0.00016 0.013 16.1 7.4 1 23 518 541 518 541 0.98
Sequence Information
- Coding Sequence
- ATGTTATGCCGATTGTGCATTAGTGATTGTGATCACGATTCTTTAGAATTATTTGATTCTGGTGGGGAAAATACCACAATTTACAAtgttgttgcaaaatattttgaaaaggaGATAAAGAATATGGACAAAGTAAAAGCAGAATTAGATGCAGAACAGTGCCAGGGAGCAGCAGAGTTTACGTCACAGGTGATTTGCGTGAACTGCTGGCGGCACATAGATGATTTCCATCAATGGCAGAAGGAGTTAGTTATCTTAAAAGATGAACGTTTGAAACTACTACAGCAACCATATCAAAGGGAACTGGTAGAAAGTGTTAAATTGGAGATGGAAATGGATGTAaacaacttaaatatatatgcagaaTCATTTGCTGACGATACTTGTGATAACGACGACTATTTCAATGAGGACACTGAAGATCCTGTAGCTATATGTGAAGCCAAACTTTCAACATCGCCAAAGAAATCGCCTCCTGATGAAGACGTAGAAAATGACGATAATGACAGTCTCTATGACGATATGCCATTAttaagcagaaaaaatttaaggaaaacCAAAACATCAGCACTTACTAAGAAAAAGACCGGAAgacgaaaaaaagtaaaaaaagttgcTAAAAAAGCTTCAGATATAGATACTGATTTGGattatgatgatgatgaaaaTAAGAATGATGCTAATGGtgttgaaaaagttaaagaaaaaagctCGAAAACCAAGGAGTTTGATGCCTTTATTGCTCAGCATTTCAAGGATCAGTTACCATGTGAATTGTGCGGCCATTTATCTGCTGATTTTACTGAACTACGCACACACTTTCGCGAAGTGCATAACAATAATAAAGGCTATGTATTGTGCTGTAAGCATAAATACAGTCAACGATTTCACTTCGTTGAACATTTGCAAGTGCATTTGAATCCACAAAAGTTTCAGTGCGCCGAATGTGGGAAATGTAGTGCTAATGGCAGAAGTTTAGTGGCGCATATGAATTCTATGCACAAGCCTGAAGCATTAGAGCGGCGTTTCGAATGTGAAGTTTgccataaaaaatttgcaaaattaccAATTCTAAAAACGCACATGGAGACACATGCGGAGGGTAATCCCGACCACATCTGCAAAGAATGCGGAAAgggCTTTATTTTAGAGAGCCGCCTTAACATTCACATTCGCAATGTGCATAGTACAGCTTATCACAGTGTTTGTGACCAGTGTGGTAAATCTTTTCGTGGACGTTATGCACTCAAATATCATTTGCTAGAACATGATGGTGCAGGCAAACAACTTTGGCCTTGCGACCAATGTGATGCCAAATTACATTCCAAATTTAGTTTGAAACGACATAAACGCATAACCCATCATGACGGTTCCACCGTGTACGTATGCGGTGAATGCGGAAAAGTAGCTTTAACCGAGGATGCACTAAAGTCCCATAAACGCTACGTACATCAACGAGAGCGTATACACAAATGTACGGTGTGTGATAAAGCGTTTAAAGCTTCAAAAGTGTTAAAAGAACATATGACAACGCATACAGGCGAGGACTTGTACCAATGTCCACATTGCCCACGCACATTCAAAGTGAATGCCAATATGCATCATCATCGGAAGAGGAAACATCCAAAAGAATGGGCGGAAAATCGCAGGCACCGGCCAATGTCATTCAAACATATGGATCTTAGCGCTATTTCGAATGAGGTAGTGCTGTaa
- Protein Sequence
- MLCRLCISDCDHDSLELFDSGGENTTIYNVVAKYFEKEIKNMDKVKAELDAEQCQGAAEFTSQVICVNCWRHIDDFHQWQKELVILKDERLKLLQQPYQRELVESVKLEMEMDVNNLNIYAESFADDTCDNDDYFNEDTEDPVAICEAKLSTSPKKSPPDEDVENDDNDSLYDDMPLLSRKNLRKTKTSALTKKKTGRRKKVKKVAKKASDIDTDLDYDDDENKNDANGVEKVKEKSSKTKEFDAFIAQHFKDQLPCELCGHLSADFTELRTHFREVHNNNKGYVLCCKHKYSQRFHFVEHLQVHLNPQKFQCAECGKCSANGRSLVAHMNSMHKPEALERRFECEVCHKKFAKLPILKTHMETHAEGNPDHICKECGKGFILESRLNIHIRNVHSTAYHSVCDQCGKSFRGRYALKYHLLEHDGAGKQLWPCDQCDAKLHSKFSLKRHKRITHHDGSTVYVCGECGKVALTEDALKSHKRYVHQRERIHKCTVCDKAFKASKVLKEHMTTHTGEDLYQCPHCPRTFKVNANMHHHRKRKHPKEWAENRRHRPMSFKHMDLSAISNEVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00191590;
- 90% Identity
- iTF_00191590;
- 80% Identity
- -