Bole020355.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02033874.1:8756078-8766176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.15 12.8 0.2 1 23 460 485 460 485 0.97 2 12 5.9e-05 0.0051 17.4 4.4 1 23 490 513 490 513 0.96 3 12 5.6e-05 0.0048 17.5 1.8 3 23 520 540 518 540 0.97 4 12 2 1.7e+02 3.2 8.9 2 23 547 568 546 568 0.94 5 12 0.00048 0.042 14.5 3.3 3 23 577 598 576 598 0.95 6 12 0.011 0.92 10.3 1.0 1 23 604 627 604 627 0.95 7 12 0.014 1.2 9.9 0.2 2 23 638 660 637 660 0.96 8 12 0.00015 0.013 16.1 0.1 1 23 690 712 690 712 0.97 9 12 0.00019 0.016 15.8 1.4 1 23 719 743 719 743 0.97 10 12 0.00037 0.032 14.9 0.2 3 23 751 771 750 771 0.97 11 12 0.0058 0.5 11.1 0.3 1 23 778 800 778 800 0.98 12 12 0.00019 0.016 15.8 3.3 1 23 806 829 806 829 0.98
Sequence Information
- Coding Sequence
- ATGGAGACTTGCAGGACCTGTGCGAGATGTGATTTTGAGGATGAAACCAAATGGTTCGACTTATTTCACACAACGCGTTGTACGAGAGAAATTGAAGAGATGCGTGTGGAGTTCAATAATTGGCATTTGcagATTTCCCCCAACGACGGATTGCCACAGAAAATCTGTTCCGATTGCTTTTCGAAATTTTGTAATGTGTTCACCTTTCGCATGCAATGCCAGCAAGCACAAGTGAAGCTAAATAACATATTCGACAAAATCGAAACACAAAGTATGGACGATGACCGATTCGAGGATAATCTTGAAGAATTAAGTGCTCAGCTGTTGCGAATTGTCGAAGAAAATGAACGCCAAATAACGAATTTAACTTATAACGAACAAAACTGCCAAATAGTTGATTGTACTGCCACTAGTGGTGACTCCATCGTTTCGCCCAATGCCACTCCTTCGGCTGCTGCCATAGTGATGTTGGATATGCTTGATGAAAATAGTGATAACAATTacaccaccaccgccaccacaACCGTCACTGCAACGACTAGATCCAGTGGAGTGTGTGAGAGAGTCGAACAGTATACTGATGACATTTTAGCAGTCCAAACAGAGGTTTCACCCAAAACAATCGAAGACTCTTTCTTggcaaaaacaatttcaataacAAACGAGAATAATGCAACTGCTGCCCCCATAACTGAAGCTAACATTTACACTGCCGGCGTTGAATGTCAAAGTGAAGCGGAAATGCAGATGACAAAGTTGACGACTGTAACTGTTAAAACAATGGCAGTCGATAACGAAGTAGAAGAaggaaataaaaacgaaaatgaaataGAATTAGAACTGGAACACGAAGAGGAAGATATAAGCGAGCAAATACATTTACACGTAGATGATATAATTGAGGAAGACTTTACGCTTGAAGACCAACTGGTGGAGGAGAAAGCAGAGACAACATTAGGTACAGACAGATCATTGGACCGAGACCTTACTCAGGAAGACTGCTATTTAAATGTAATGAGCGGAGATGTGTCACAACCTGAAGGTTATGCCGAAGAAAGTGTGCCTTTTGTGGAAGCTGTTGAAGATGAAAATGACGTTTATGAAGAAGATGAAGGAGTATTGGAAGCATTCGAACCCGTCACACTTCCAACGAACACCTACAATACAAATAACAATACTATTTTAGGTTCACAATTTGTCTTTCAGTCGTCTGCTACGAGCAAGTGCTACAGTCAAACAATGGGCCAACCACCAGATGTTAGCATTGTTTTTGAGTGTAAATACTGCCACAAAACCAAAGACGTGCCAAGCACTCATTTCGAAACTCAACAGACACTACTCGAACACataacacacacgcacaacGCCGAATATCCCTTTACATGCCCGCAACGCGGTTGCACAGAGGGTTTTCGCGACGCCGCCTCACGCACGGTCCACATGAAAAGCGAGCACGTGGCCAAACATTATGAGTGTGATGTGTGCGGCAAAAAGTATGCCGATCGCTTTAACTTACGCCATCACCACGAGAAGTTCCACAGCGAGACCGATTTTGGGTGTGACACTTGCGATAAGCGTTTCTACTCGCGTAAAAGTCTTAATTACCATATGAAGTGGCACAATCCggaattgttgttgcattgtagTCACTGCGATCGTTTGTTTATTAATCAGCGACACTTGAAGTGTCATGAAGAAACGCACAACGGGGTGAGGAATAGTGAATTTTGTACGTTTTGTGGTAAAACGTTCATACACTTGAAAACTTTGCGTTGGCATTTGTATCGACAACATGGCGGCGAAAAACCATACAAGTGCGGCCACTGCACTGAGGTTTTCGCTTCGTACCTGGAGAAGCGCATACACATGCTGGAGAATCATTTGGAGAACCTCACCGGCATCGAACGCACCGAATGCATGCTCTGCCGGGAACGCTACGAGGATGAACGCGATCTGATCGAACACATACGTAGCAAACATGTTGAAAGGCCGAAGTCTTCCGTGCTGCTAATAGCGAACAATAAACGAGTGGTGCGTAATAAGCGACAGAAGAACTATAGCGGAATTTTTCAGTGTGAGATTTGCGCCCAGCGTTTCAATATGAAATCGGCGTTGGAGCGGCACGCGGCGGTGCATTCAAGTATTGGGAGACCGCACAAATGCCCGGTGGAGTCGTGTGCGAAGCGTTTCAAGCGTGCGCAGGATATGAATTGGCACATGAAGACGCATTCGAACGAGAAGCCGAACATTTGCGATGTATGCGGCAAAGGATTTGCCCTGAAATATGTGCTGAATCAGCACAAGCGGAGCCATGAAGTCCttgagaaaaatttcaaatgcgtGATCTGCGGACGTGCCTACCTCTTTGAGAAATCCCTGCGTGTGCATGAACGAGTACACACGGGCGATACATACTACCGCTGCGATTTGTGTGGCGAAAATTTTGTTACGCACATGAAATTCAAAActCATATGATGAAAAATCATGATCCGGAGACAACAAATCTTGAGGATTACAATATGGATGCCTTTGAAGAACAACTATACGAACAATAG
- Protein Sequence
- METCRTCARCDFEDETKWFDLFHTTRCTREIEEMRVEFNNWHLQISPNDGLPQKICSDCFSKFCNVFTFRMQCQQAQVKLNNIFDKIETQSMDDDRFEDNLEELSAQLLRIVEENERQITNLTYNEQNCQIVDCTATSGDSIVSPNATPSAAAIVMLDMLDENSDNNYTTTATTTVTATTRSSGVCERVEQYTDDILAVQTEVSPKTIEDSFLAKTISITNENNATAAPITEANIYTAGVECQSEAEMQMTKLTTVTVKTMAVDNEVEEGNKNENEIELELEHEEEDISEQIHLHVDDIIEEDFTLEDQLVEEKAETTLGTDRSLDRDLTQEDCYLNVMSGDVSQPEGYAEESVPFVEAVEDENDVYEEDEGVLEAFEPVTLPTNTYNTNNNTILGSQFVFQSSATSKCYSQTMGQPPDVSIVFECKYCHKTKDVPSTHFETQQTLLEHITHTHNAEYPFTCPQRGCTEGFRDAASRTVHMKSEHVAKHYECDVCGKKYADRFNLRHHHEKFHSETDFGCDTCDKRFYSRKSLNYHMKWHNPELLLHCSHCDRLFINQRHLKCHEETHNGVRNSEFCTFCGKTFIHLKTLRWHLYRQHGGEKPYKCGHCTEVFASYLEKRIHMLENHLENLTGIERTECMLCRERYEDERDLIEHIRSKHVERPKSSVLLIANNKRVVRNKRQKNYSGIFQCEICAQRFNMKSALERHAAVHSSIGRPHKCPVESCAKRFKRAQDMNWHMKTHSNEKPNICDVCGKGFALKYVLNQHKRSHEVLEKNFKCVICGRAYLFEKSLRVHERVHTGDTYYRCDLCGENFVTHMKFKTHMMKNHDPETTNLEDYNMDAFEEQLYEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083344;
- 90% Identity
- iTF_00193799;
- 80% Identity
- -