Basic Information

Gene Symbol
wek
Assembly
GCA_001188975.4
Location
LGAM02019890.1:9896069-9897936[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00015 0.013 16.1 3.1 1 23 295 318 295 318 0.98
2 9 0.0014 0.12 13.1 0.4 1 23 325 348 325 348 0.96
3 9 0.046 4 8.3 0.4 1 23 355 380 355 380 0.94
4 9 3e-06 0.00026 21.5 0.5 1 23 389 412 389 412 0.96
5 9 0.00059 0.051 14.3 2.3 1 23 428 451 428 451 0.94
6 9 0.0003 0.026 15.2 0.3 1 23 457 479 457 479 0.98
7 9 2.3e-05 0.0019 18.7 0.3 2 23 485 507 484 507 0.94
8 9 0.0011 0.095 13.4 5.4 1 23 513 535 513 535 0.96
9 9 1.4e-05 0.0012 19.3 2.5 1 23 541 563 541 563 0.98

Sequence Information

Coding Sequence
atgtcgGTACTATCAATAGAAAATGTAAAAGAGCATTGTCGAACttgcttgaaaaaattgaaaagagaGAATATTagttgtttaataaatttagagGAGGAAGAAGAACTTTCCGAGTACAAAGATTTTTGTATTAGCATTGTAGGCATTGAATTAATACAACAATTTATAACTTCATGTATGGAAGGACAGTGGATTAATGAAGAAGCGAAACCGATGTCTCAAAAATATCctcaatatatgtgtatgtgttgctataagaaattaCAAGGCGTTTGGTCATTCAAAAAACAAGTGAGAAATAGTACGCAGAGATTGCAAGAGTTAATTTGCTTAGGTGCAGCTAAAGTTGAAATTGTTGAAGATGAAAAACACCACGAATTTGAGGATAATTCCGGTGTACAACAAACCACAACAGATATCTTCAATTTGTTGCTTAAAGATACTCTTATGGAAACCGAATCTGTTATGATTAATACAATGAGTGATGTAGCAACAATTAGCAAAGCATTACCTGACCCAGATCCATTCGGTAATGGTACTGCGATAGATATtgcaaaaaaggaaaatttgagCGATGATAAGTACGAAAGCAATAATGAAGAATGGCATGGTTTTAACGAGGAAAATTCCAACGAAGGAGAATATAAACGAAATATAGATCAAGACAAaggaaacttaaaaaatatttttaaatcatcgACTGCAGTGGAAGATAAGGCTCAGTACAAGAAACACCGAGATTgtaatttggaaataaaaaagtatccTACCCGTTCTCGTAGAAAACGTGCTCTACCCATTGAAAATATCAATACTGCTAATACAactgacaataaaataaagaGTACAAAACGTCGTAACAAAGGCACTAAAAACAGTTTCAAATGCGAGCAATGCAGTCACAGCTTTGCACACAAAATAACACTGGATGCTCATATACGCAAAGTACACGAAGGAAGCAAACGTCCATTTCAATGCGATCGTTGCGAAAAATCGTATACTTTTATTGGAGGTCTTTATACTCATATCAAGGAAATACATGATGCTGAAGTTAGATCGTATGCTTGTGACATTTCCGGATGTGAGCGTATGTATACCAGTTTCATTGCAATGCAAAAGCATAAACGTTTAAAACACTCCGATACGTCGTGTATAACCAAGTACGTGTGTGAACAATGTGGTGCGACCTTTAATCAATCGGGTAATCTTAAATATCATCGGCGTGCAAAACATCCTACGGAAGCAGAAAAAGCTGAAAAGGAGCAGCTGAAAGAGCGTTTTGAATGTAATGTTTGCAACAAGCTGTTTTATTCACGTTACACACTGAAATATCATACCCTGCAACTGCACACAAACGAAACAAAATATGAATGTAAAATTTGCGGTCGACGAATGGCTAAGAAATTTATGCTTGTCCAACATATGCTAGTTCATTCTAATGACAAAATGCCTTGCGAACACTGTGGCAGGCAATTTATACGGAAATTTGAACTGGAGGCCCATGTTAAAGCAGTGCATATGAAATTGAAGCCTTTCGAATGTCAGTATTGTTCAGAATGTTTTGCTTCGAGGAAAACGCTACGCCatcatgaatatatacatacaggaGAGAAACCTTATGTTTGTGATGTCTGTGGGCAAGCATATCGACAACAGACATGTTTAAAAAACCATCGAAAATCACACGAAAAATTGGTTgcggaaataaaaacaattaatgctAATCAGGAATTACTGAATTAA
Protein Sequence
MSVLSIENVKEHCRTCLKKLKRENISCLINLEEEEELSEYKDFCISIVGIELIQQFITSCMEGQWINEEAKPMSQKYPQYMCMCCYKKLQGVWSFKKQVRNSTQRLQELICLGAAKVEIVEDEKHHEFEDNSGVQQTTTDIFNLLLKDTLMETESVMINTMSDVATISKALPDPDPFGNGTAIDIAKKENLSDDKYESNNEEWHGFNEENSNEGEYKRNIDQDKGNLKNIFKSSTAVEDKAQYKKHRDCNLEIKKYPTRSRRKRALPIENINTANTTDNKIKSTKRRNKGTKNSFKCEQCSHSFAHKITLDAHIRKVHEGSKRPFQCDRCEKSYTFIGGLYTHIKEIHDAEVRSYACDISGCERMYTSFIAMQKHKRLKHSDTSCITKYVCEQCGATFNQSGNLKYHRRAKHPTEAEKAEKEQLKERFECNVCNKLFYSRYTLKYHTLQLHTNETKYECKICGRRMAKKFMLVQHMLVHSNDKMPCEHCGRQFIRKFELEAHVKAVHMKLKPFECQYCSECFASRKTLRHHEYIHTGEKPYVCDVCGQAYRQQTCLKNHRKSHEKLVAEIKTINANQELLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00193790;
90% Identity
-
80% Identity
-