Bole019019.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02019890.1:127402-129855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.1 13.3 0.6 1 23 370 392 370 392 0.99 2 10 0.16 14 6.6 1.3 1 23 397 419 397 419 0.93 3 10 2e-06 0.00017 22.0 1.2 2 23 427 449 427 449 0.95 4 10 6.6e-06 0.00057 20.4 0.0 1 23 454 476 454 476 0.97 5 10 1.5e-06 0.00013 22.5 5.6 2 23 483 504 482 504 0.97 6 10 9.3 8.1e+02 1.0 13.7 1 23 537 559 537 559 0.98 7 10 8.7e-05 0.0075 16.9 0.3 1 23 565 587 565 587 0.98 8 10 3.6e-05 0.0031 18.1 4.0 1 23 593 615 593 615 0.98 9 10 1.5e-05 0.0013 19.3 1.8 1 23 621 643 621 643 0.98 10 10 1.8e-05 0.0016 19.0 0.4 1 23 649 672 649 672 0.94
Sequence Information
- Coding Sequence
- atggaaGTATGTCGTATTTGCGGAGGAGCTGAAAGACTCAAAAGTTTTCAAGGCGATGAGCAATTGAAGGAGTTGCTAAGAGTTTGCGCGAACATTACAataGAAGAAAATGACTTTTTACCAAAGCATATATGCGAGCAATGTGAGAATGGTTTGCGTTTTTCTTACCAGTTGCGAAAACAAAGTGAAGAAACCGAAAAGCGGTTACGGCAGGAGATGCAGACACAAACCAATAGTACAATTGATATTCTAGATGAGTTTACTTCGAATGATGTGAATCAATTTGCCCAAACGGCTGATTTAATAAGACACAAAAGTCTGATTTcagaaataaacataaatatttcgaCTACAACTAAAGAATCGAATTGCGTACTTATCGAAGAAAATCACACACAGGAGATATTTGCGTCCACAAGCCTATGTATGGAAATTAAAGAGCACCAGAGCATTGTAGAAATATTAGATGATGACAATTTGCCCGAATTATCAGAAGAAGAACGTCTCAGGTTAGATTTGCAGAAGCGAGGCGTCGATATGCAGAAGCGCTTGGTGTCGATAGAAAACGAACCGTTTAATCAAGGACAGGAGGTAATTGCAGAAAAGCGAATTCAACTGGATTTGGATACGCAGACAGATGTATTTAGTGATATGGAAATGCCGGCGGACAaatgtttggaaattttaaataatgaatttaacGAAATTAACGATGAAGATGACATTATTGAATTAATTGATGATGATTCAACGCCAGAGTTACCGGACCAAGAATTTTCTACCAAACAAGTATGCGAAACATTGAATACAGACGAAAATCAAGATAAGGACTTTGTAGAAGAGATATTGTCTTCAGACGAAGAAGATCAGGGTATAGGTTACCAAACGGATATAGTATATGAAGAATCCTCTGATGGTGTTGACGAATCCATCAATATCGATGATTGTCAAATGCATTTTATGAAAGAAGAAGGTAGTGATTTTGCTGGCAATGAGTGCATTGAAAATGAGTCGGTTATAACACAAGAAAATGAGGGGGACATAACGACGATAGGTGTTGACGGTGAAACACATAATAATTCGAGTGATGGAAAATCGGCATGCGTATACACCTGCTCCACATGCGACTTACAACTATCTACAGCTGCAGAATATCGTGAGCACACCAAAACACATTATGATAAACGATTTCTCTGCAAGAAATGCAATACATGGTTTCCACTACGTACCAGCCTAGAAAAGCATTTACTGTTTCATGAAAGCGAACAACAGAAACCAGAATGTCCACACTGTGGACGTACATATCAGAGCCGTTGGAATTTAAGACGGCACATACGTGGCATGCATGATAAAGTTGTTTATATGTGCGACATTTGTGGTAAGGCGTTTCCCCGGTCTGATGTACTGCAAGTTCACGTGGCCAAACATTCAGAGGATGGCGACCTTCGGTGCGAACAGTGTTCGAAATGTTTCAGTTCAAGGAGTACCTTAAAAAATCACATGAAAACTCATCTAAAGTCCtcaattgtaaaaaaaagtgaaaatgtcACAAAGATTGCTAGTGCTGGTGTTGGTGCTGACGCTAAAAACACCAATGGAAAAAAGGTTTACTGCTGCCACTATTGCGGCAAGGAGTCCAAACATCATTTCACCCACAAAATgcatatgcgcatacatacgCAAGAACGGCCGCATAAATGTGAAGCTTGTGATAAGGCTTTTCGCACAATGGCCGCGCTGATTACCCACGAACGCATACATGAGGATGCACGGCCATATCAGTGCGAACACTGTTTGCTCTCCTTTCGACAGCAGGGCCATCTCAAGGAGCACCGTATGATACACGAAGGCATTACACCGCATGTGTGTAGTATTTGCCAATTGtcatttaccaaaaaaaacaatatgctTGTGCATATGCGTATACACTCTGGTGAAAATCCCTATAAGTGCGTTATATGTGATAAGCAGTTCAAGAAAGCCGCACTATTGCGAAAACATGAAAACGAGGTgcataacaaaaacacaactGATGAGCATGCAGGCGATAGCACATTTATTGATTTAGCAACAGAGTTGGTATGCAGCGATAGCAACAGTCTGGAGCTAATAGAAACAGAGAATGCCTCGTCAATTGAGAGCAGTGCCATAAGCAATGGCGTTGATATGCAGGAGGGCTTCGAAGAAATGCCCGATGTAATTAGAAATGTAGTTTTAGAACAAAATCATACTAGAAATCCAACCAATAATGAGTTTGATGTAATTGACAGTGGCGTTGTGTTGGTGGTGGATGATAACGCGAAATTTAATAGCTTATTTATTATGGatgattaa
- Protein Sequence
- MEVCRICGGAERLKSFQGDEQLKELLRVCANITIEENDFLPKHICEQCENGLRFSYQLRKQSEETEKRLRQEMQTQTNSTIDILDEFTSNDVNQFAQTADLIRHKSLISEININISTTTKESNCVLIEENHTQEIFASTSLCMEIKEHQSIVEILDDDNLPELSEEERLRLDLQKRGVDMQKRLVSIENEPFNQGQEVIAEKRIQLDLDTQTDVFSDMEMPADKCLEILNNEFNEINDEDDIIELIDDDSTPELPDQEFSTKQVCETLNTDENQDKDFVEEILSSDEEDQGIGYQTDIVYEESSDGVDESINIDDCQMHFMKEEGSDFAGNECIENESVITQENEGDITTIGVDGETHNNSSDGKSACVYTCSTCDLQLSTAAEYREHTKTHYDKRFLCKKCNTWFPLRTSLEKHLLFHESEQQKPECPHCGRTYQSRWNLRRHIRGMHDKVVYMCDICGKAFPRSDVLQVHVAKHSEDGDLRCEQCSKCFSSRSTLKNHMKTHLKSSIVKKSENVTKIASAGVGADAKNTNGKKVYCCHYCGKESKHHFTHKMHMRIHTQERPHKCEACDKAFRTMAALITHERIHEDARPYQCEHCLLSFRQQGHLKEHRMIHEGITPHVCSICQLSFTKKNNMLVHMRIHSGENPYKCVICDKQFKKAALLRKHENEVHNKNTTDEHAGDSTFIDLATELVCSDSNSLELIETENASSIESSAISNGVDMQEGFEEMPDVIRNVVLEQNHTRNPTNNEFDVIDSGVVLVVDDNAKFNSLFIMDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -