Bole014820.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02028583.1:4733300-4735863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.054 4.7 8.1 4.9 1 23 126 149 126 150 0.95 2 13 0.0035 0.3 11.8 1.2 2 23 155 177 154 177 0.91 3 13 2.2e-06 0.00019 21.9 6.3 2 23 187 209 186 210 0.96 4 13 0.00039 0.033 14.8 11.5 2 23 425 446 425 446 0.98 5 13 5.6e-06 0.00048 20.6 4.8 1 23 452 475 452 476 0.93 6 13 3.5e-05 0.003 18.1 0.2 1 23 480 503 480 503 0.98 7 13 4.1e-06 0.00035 21.1 4.0 1 23 513 535 513 535 0.96 8 13 0.09 7.7 7.4 2.1 1 23 540 562 540 563 0.94 9 13 1.9e-07 1.7e-05 25.2 0.4 1 23 569 591 569 591 0.96 10 13 7.4e-06 0.00063 20.2 0.5 1 23 597 619 597 619 0.98 11 13 7.2e-07 6.2e-05 23.4 1.7 3 23 627 647 626 647 0.99 12 13 7.1e-08 6.1e-06 26.6 0.2 1 23 653 675 653 675 0.99 13 13 0.17 15 6.5 0.1 1 23 680 703 680 703 0.90
Sequence Information
- Coding Sequence
- ATGGAATCCATAAATATATGGCACACTACTGTAAACTCAAATCACATTTGTCGAATATGTTTACAAgaaaatgttgaattgttttctatttttcaagAGACACATAAAAGTGGTGTAACTATAGCTCATATATTGTCCGAGTGTTCGCGATTTCCTGTCATATCAACTGATAATATATTACCACAACAAATGTGCTccttttgtatggaaaacgccCGGGATGCTTATGACTTTAAACAACGAGTCGAAAAGGCTTATATATCATTAAAGGGCTTAGAAAATAGCTTTTTTCAAAGTGAAACCAAAATAGAACCCGTTAACATTGTTTTTAGTGAACGAAGGGATTATGGTACACAAACTGATAAGCTGAGCTTACATCCATGTGAAATGtgcgaaatgaaattttttgatttgatggAACTGCGGCATCATCGAAAGCAAGTTCATCACAACAGCAATTTGCAATGTCGTATATGTGGTGTACGCTTTGAACGCATTAGGCAATTGCGAAGCCATTTAGTTCACAAGCACCCCAGTGTGGGTATAGCATTGGATACACAATGCACCATATGTCGCAAGCGTTTTTCTCGCAGAGAACATTTAAATCGTCATATGCGTAATGTGCACCATCAACCTGAAGAAGCGTCAagTCCTAGGGTGTCTCTAAAAGAACCGGAAATCGAGCTTTCAAGTCATGTGGGCAAAAATAATGAACGAAACGTATTccaatatattgaaacaaagagTTCGACTCTAGATACACAGAAGCCTAAAATTTTCCTGAAGTCCGAGAAAATGTTTAATGCCATCGACAACGATAGCTTTGTCGGTCCATCCCATTTTTTTGAATGTGGTCAAAATGCATCGGATGATGTGGAAAGCGATATTAATATGGATACCAACCCCATTTCAAGTGATGACGAAGCGCAAGATGGTGTGCAATTTTCTGAAGATATATTACCTCAATTAAAATTAGAACATGAAGCTGGAATCAAAGtgAAATGTGAACTAGACGGATCAGTGGATGATTTCGACATTATGCGCATGGCTCCCGATTGGGACCAAAGCAGATCACCAGTATCTAATAATGACattaaaaaagaagaatttttaaatgatGGAGATACACAGAGTTCGAGTGCCGTGAAACGAAAGTCAGATAAAAATGAAGAGCCGGAAAATGACGTCGCCGATAGGCGGCGTATTACAGAAGTTGTTGATGAATTTCTTGCCCAAAATTCTGCTGTGGACCAAACTGCAAATTCTGAAAATCGATGCACAAAGTGCCAGCGAACTTTTTCGCGTCATTGTCATCTGCGTCGTCATATGTTGACCCACGTCGAGGAAAAAGCGCACGCATGTAACTATTGTCCAAAGCGTTTCGCGCGTAGTgatcatttaaaaaaacatattataaacTTGCATCACACGAAAGAGTTTAAATGTGATCAATGTAACAGCGCTTTTGCACGTTCTGTAGATCTGGCGAAGCATATAGAAACCCGTCATGGAAGCGATCCGCAAGCCCATAAGATTCACAATTGTGAATATTGTGGGAAGAAGTTTACAAGCCGAACATACCTTCGAAAACATGTACTGATGCATACCGACCGCGTATTTGCTTGCAAATTTTGCGAGGACACTTTTAAGGAGCGTAAAGCTTTGCGTGAACATGAGAAGGGTCATCATAGTGATCGTCGAAATTTTCTTTGTTCAGTATGCGGTGAAAGTTTTGTACGCAATGATTATCTGCGTGTGCATATGCGACGTCATAATGGCGAAAAGCCATATAAATGTCAATACTGTGGAAAGGGGTTTCCCCGTGCCACTGATGTTAAAATACATGAAAGATATCATACGGGTACCAAACCAAACTTATGCAATCTATGTGGCAAGGGTTTCCATCGTGCTTATAATCTGACCATTCATATGCGTACACATACAGGAGAACGGCCTTTCAAATGCGAGGAGTGTGGACGTGGATTTGCTCAAAGCAATGATTTAAAAGCACATATACGACGACACACCGGTGAACGGTTCAAATGCCGTGAATGTGATGCAGGGTTTCTACAGATGTACGCACTTCGGCAACATGCACTTGCAGCTCATGGTATATACATGGAGCCTGCAACGGGTCGTTTACAGAGATTCAATCCTAGTGAAGCACTGGCACCAGGTGCAGAGGCAATATCCCCCAACGATTTGGTACATCCAAGTGGTGGTCATATGGAAATAATGCAAGAAAAGCCTCATCAGCAAATAGCGCAAACAGAAAAAGGAATTAGTTCTCTTATACCACCAGCTCAATCTTCAGAGTAA
- Protein Sequence
- MESINIWHTTVNSNHICRICLQENVELFSIFQETHKSGVTIAHILSECSRFPVISTDNILPQQMCSFCMENARDAYDFKQRVEKAYISLKGLENSFFQSETKIEPVNIVFSERRDYGTQTDKLSLHPCEMCEMKFFDLMELRHHRKQVHHNSNLQCRICGVRFERIRQLRSHLVHKHPSVGIALDTQCTICRKRFSRREHLNRHMRNVHHQPEEASSPRVSLKEPEIELSSHVGKNNERNVFQYIETKSSTLDTQKPKIFLKSEKMFNAIDNDSFVGPSHFFECGQNASDDVESDINMDTNPISSDDEAQDGVQFSEDILPQLKLEHEAGIKVKCELDGSVDDFDIMRMAPDWDQSRSPVSNNDIKKEEFLNDGDTQSSSAVKRKSDKNEEPENDVADRRRITEVVDEFLAQNSAVDQTANSENRCTKCQRTFSRHCHLRRHMLTHVEEKAHACNYCPKRFARSDHLKKHIINLHHTKEFKCDQCNSAFARSVDLAKHIETRHGSDPQAHKIHNCEYCGKKFTSRTYLRKHVLMHTDRVFACKFCEDTFKERKALREHEKGHHSDRRNFLCSVCGESFVRNDYLRVHMRRHNGEKPYKCQYCGKGFPRATDVKIHERYHTGTKPNLCNLCGKGFHRAYNLTIHMRTHTGERPFKCEECGRGFAQSNDLKAHIRRHTGERFKCRECDAGFLQMYALRQHALAAHGIYMEPATGRLQRFNPSEALAPGAEAISPNDLVHPSGGHMEIMQEKPHQQIAQTEKGISSLIPPAQSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00190807;
- 90% Identity
- -
- 80% Identity
- -