Basic Information

Gene Symbol
Arid4b
Assembly
GCA_001188975.4
Location
LGAM02018580.1:278825-289175[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.5e-29 2.2e-25 89.0 0.1 1 88 297 382 297 383 0.95

Sequence Information

Coding Sequence
ATGCAACAAGTGGACACAGATCCACCATCCCTACCGGTTGGTACGGAGGTAAGTGCCAAATACAAAGGAGCCTTTTGTGAAGCTAAGGTTAGCAAAGTGGTGcgtaatataaaagtaaaagtggCTTATAAGCAAGGACTAGGATCGGGAATTGTGTCAGACGACTTAATAAAAGTTGCACCTGGGCAACTGCGCGTTGGTGCTACTGTTGAAGTTCGTCATCCCGATCGTAAAGATTTGGTAGAGTGCACAGTTACTAAAATTCAAGATTGCTCGCAATATACCGTGGTTTTTGATGATGGCGATATAACGACTTTACGTCGCACAGCTTTATGTCTGAAAAGTGGCCGTCATTTCAATGAGAGTGAAACTTTGGACCAGCTACCACTAACACACCCAGAGCACTTCGGAAATCCTGTTGTAGGAGGACGTCGGGGACGCAGACGTGGCCAGTTGAACGATGATAGTTCCGATGAAGAAGATGAAAGTGATGCGAAAGAAGTTGTCAACGAAAAAGAAGAACACATAGGAAATGTTGTGTGCGTGGAAATGGAAACAAAGAAGAAGGATAAAGAGAAGTGGTTCCCAGGGCTTATATTAGCTCCTACAGCTCAAgCAAATGTGCGGATCAGAGTGAAAGATGAATATTTGGTAAGATCATTTAAAGATGGTCGATATTATACGGTTCCGAAGAAAGAGACAACCGAATTTACTCGTGAAGCGGCAGCTAAACAAGATGGTCAAGCAGTACAAGCTGCACTTCAATATTTAGATAGTGGAGCACTACCCCCCCATTGGGATCGTGAGTCTTTATTTGGACTAAATAATTCATCAAGTGAAGGTGATGGTGAATTGGAATCCGATTCGTCAGACGATGAACCACGGGAAGAAAAAGATCGTTTTGTGGCtcaattgtataaatatatggatGATCGTGGAACACCATTAAATAAAGTACCATCAATTCAAAATCGGGACGTTGATTTGTACCGTCTATTTCGAGCAGTACAGAAATGTGGTGGTTACAACCGTGTTACCGCTAAAAATCAATGGAAATCCATAGCGGTACGCTTGGGCTTTACATCAGTAACAGTTAGTGTAACAAATCTTGTTAAGCAAgcgtataaaaaatttcttcaaccgTATGGTGAATTTCATCGTAAACTGGGATGCTCAATGCTAATGACACCTCGCAATTCTAATCGGAGTAAGGGCCGTAGTTTAGTTCGAGCAAACTCTGTTGCTTCTCCAAAGCCAATTGACAACACAAAAGATTCCTTGAACAAACctgcaaataataatataactgcGTCATCGTCTTCATCATCGTCTTCTGCCTCTAGTAGCCAAAATATTGCAGCATCGTcagttgttgcaacaacaactgccaATATAATCACGGTTGTCACACCTTCTGTAACGGAAGAGTCGGAAAATACAAGCGAATCCAGTCTAGACAATGCCAAGAATAAGAGAAAAGCTGTAGTGGGAAAAGTTAAAGGTcttgttgaaaaatatgaagaaaaatcgAGAGATGATTGCGATGTGCCGCTTTCAAAAATGAAGATGTCGGCAGAGACTCCACGATGTGAGGACAAGGATAAGGCACCATCTCTAAAGGATGTTTCTGCCGGCCCAACGTTACATATTAGGGATTCTTCACCCCCAGGTACAAGTGCTGGAAGTAAAAAAGATAAGAGTCAAAAAAAGCAAACCCCTCAAAGTGACGATAAGcgaaacaaacgaaaaaaagaTGATACAATTGAAAAGGTAGATACCGGCGATTTTATTGTTGAGGTAGGAGACAAACTTAAAGTATATTACCATGAGAAAAAGGTGACTTATGAAGcaaaagttattgaaatatCTGTACAACGGGGTTCACCGATGTACCTGGTTCATTATACCGGTTGGAACAATCGTTATGATGAGTGGGTACCAAGAGAACGCATTGCTGAGAACATAACTAAAGGGTCAAAACAGAAAGGACGTATGGCAAATGCAAATTCGATGGAGAAACAAAAGGATAATCCTTCAAAACCACCTTCAGTTTCCTCATTGAATCCGACAGGTCCTCCAAATTCGATGGCAAATATATTAGGCAACATACCAATATCAACAAAGTTGTCAGTATCATCAAAACGTGGTCGTGGTCGAAGTGACTCGCTCCCGCCTCGTTCCACTACACCCTCTTCAGTAGCATCTAACTCCAGCCGAACAAAATCACCTGCCACATCTGGCCTAAAAAGAAGACCGATTCGTTCAATGGTTAATACTACGCGACGTACATCTGCAAACGTTTCTGATGTTTCTTTACAAAGTGAATCTGATACGGACTCCGATGAACCAGTCAGACGACCAACTCGTGGTAGTAAAGAAATTGAGTACAAGTCAGGATCTTTAAGTGGTAAATTAGCAAACAAGAGTATCAACTCGGATACAGATGTTGACGATGAGGAGGATGATACTACGCTTATTATTGGAACAAATATTAACTCCACTAAGGGTCGTAATTATGACCTTAATCAAATTCGATCTGAACTAAGGGAATTGAAATCACCTTCGCCACCATATTTGGGAAACGACGAATTGGTGTCAAAAGTGACACAGCCGATTAAAGTGGAGAGCGTAATAGATGTTAAAGATATTTGTTCTTCTAAAAGCAAAGCAATAGTCGAATCAAATACTGAAGTGATCACCATTAAACAAGAAGTGAAACAAGATCAAAAAGATGACACTGTGAAATCGTCTACGGATATGTCTTCAGAGACGGAATCATTTTGTGATGATGACTCGCAATCATCAGGCAAAACGACAACTCTTGAAAACATGACAAAAAGAtttcagcaaaaaataaaagccGGTAAACAACAAGCTTTAGAAAAACTTTCTTGTGGAAACCCTACAGTGGAACGGGTACCAAAAgttgtagaaaaaataatacagGATTCACTCGCAGAAAAGCTTCAAGAGAGTCTTAAAACCAAACCGGATGTAAAAAAAGAGGAAGGATTAGAGGCAAATATTAGCGACGCTGCCTTATGTAAATCGGATATTGATAAGAAAGAAGATAGTAAACcaaaaatcttacaaaatgAATTACATCAAAGGAGTACTTCAAATATCCAGCCCAGATTTGAAAGCACCATTAATAGTAGCAAGTATTCCTCCCTTATTATAGAAAAGCCGGTATGCTTTAATAAGAAGATAGAATCTGGTTGTAGTAAAAAGACAGACATTAGCAGAAAATTTGTCACAGATAGTATAGAAAGCCaatcaaaaaaaagtatagaaCCTGTGGGGAAAGagataaataaaagtgaacCGTCAGCAGCTTGCTCTCCATCCTCATCATCTTCATCGTCATCCGCATCAGCATCTTCATCTTCTCACTCATTACCAGACATGAGCAAGCTGGATATCAGTGGCGGATCTTCGACTTCTTCAATACATCTGATTCCTAATAAAGACGTAAAGTTAGCATCTGTTGCTCCGAAAGCGACCTCACCTGATATTTATGAGTTCAAAGATCCAGAACCCTTTGAATTCGAATTACGAAAGCTACAAACCACCAGCACAAATATTTCCTCATTTACCACGGGTGTAACAAGTGCATGTAATGTATCTGGAATTACTCGAAAATcaactcaaaaaaatataacttcacaAATTTCGGTTAACGAAAAGCAACAACCACCTCCAAACCCAATGACCGTTTTAGtaaatcgcaaaaaaaaagGCTCGCCAATGAAGGAAGCTGTAATAGATAAATCTAAGTTACCTAAAACTgatggaaaattaaatattatttcggagggaaaaatcaataaaattgcttCCATTATTCCAGTCGTAACAAAAGGTACATTAGATTGTCAAACGAACTTGTTAACACTAAATCCATTATCATCAAATCCGAGTCTTTGTAGTAACTCAACTACACAGAAAACAGAAGTGCTGAATAATACATCATTCGATACATTGAGAACATCaccaaattttaatgtaaacatAAACGCCTTAAATGAGGAGTTAGCGCAAACAGTACAGGAAACAACCAGAGCACTTACTGATGCTTTTCAAAAACCAAAGCTGTCGTCTTTACAGGAAGTTGCTGGTACCCCTCCAAAATTAGCGTCGCCGAAGCAAAATGATACTGAAAATTTGATGACATCTTCTAAAAACCAAGAAGAAAacgtttcaaaattaattagtcCATTACCGACTACACCCATTAAGACAGTTATTGGCAGTCCATTTATAGAGACTCGAAAAGATCTGAGCAATGTTTTTGAATTGAGTACGAGTGAAGGATTTACATCATTAAGCGAATCGAAGGATAATaagtttgaatttgaaaatgctaAGAAAATGCTTTCTGCAACATCAGACGCATTTGATTTAGAGCCTGCTAAATATGAGAATAGACCGACATCAATCGCAGACAAACTTTTAAAAgctataaatcaaaaaaaagagGAAGATAAATATAGAATTGATCCTAAAACTGAGAAAGGAGAAGATGGTGGATCTTCGAAGGATGATGTTGCGATTGTAAAAAATACAGCAGAGTTGATACTTGGAAGTGATTGTGCTTCAAATGAACCATTAAATATTAACATAGATTTAGCCGGCTCTCCAATGAGCTTCGGCAGTAATTTGAGTTTAGAAAAATTACCCATCATAACTGGCTCAATAAATAAACCCATCCCTCTTACAAGCCCTGAACCGAAGTTGGGAATACTAGAGTCTATTACAGTAAAAAATAATGACTTAACGGAGACGATACAGAAACTTGAATGTGCCATTCAACGGAAAACTCCAGTCAGTGGCCTTTCAGTTACAACTACACCAAACACATTTTCAGAGGATTCGATGGATAGTACTGATTCGGAACGTCGCCTTGTTATAGAAGACGTGGCTGAAGACGCGTGTGATATTCTTAAAAGTCCCAACGATTCACAGCCCATTGGTGagacaaaaataagtatattgccACATAAAACAGATGTTGCTGTCAGTAAAATAGTACCAGATAACATTTTGGCACATATTAGAGCCGATCCTCAAATTCAACAAACTACACATGCAAGTCGACCACAGTGTCTTAGTGCATCAGTATCGTTTCCAACCATATCAGCGCCTATAATTGTGACTTCAGCAAACAgaatatcaaccgtcttacaTGTTGTGGCTGATATGACAATGGAACAGAAAGGACCACAATTTGGAAATCCGGAAGTACAAAAGAAAGACAAGCGAAAGCAAGAAGACAGCCTATCTTTGGGCATTGAAAATAGTGCCGATATTGAAACAAGGTCTAATGAAAACTTCAGTTCAAGAGATACCTTTAGTGTTAAGTCTTTTGAAACTGCTGCCCCGTTAAGATCTGCATCACCTCTTATTGATAGTTCAAAGCAACATACTCAAAGATCAACAGATGTTGTACCGATTTTGGTTCCAGATATTCCAGTTTCGGTTGTTGTAGCTTCTGGAGCGGTGCCCTCAGTAAAAGCAGCAGCACAGGCAGCAGCTGAAGCTGCAGCTCAAAGTCCTACTTCAAAAATCCAACCGATCACACATTTGGATCATAAAACCATTGTATCTAAAACACTCTTACCTTCAAATTTAATCGTGTCTTCCGAAGAAGCTTTGACTATCGATAAAAATTCTGAGAGTAAGATTACGTTTATTCAAGATACGGGTGTATATATTGATGCATCAAatgatttgaaaattactcCGCCATCAACAGTAACCTGCCCATCGATAACAGGTATATCAGCTAATTCGGGATTTTATTTAGATGTGCGTACAGAGCTCCGACCTGAGGACGGTGTAAAACCTATTCACGACATTCAGCACACAAATACTGAGATTGAACGTTTTAACAGCAAAAAAGTTGAAGGTACTTTATGCGCTGATGAATTAGCTTCTAATTTTGGTGTTGATACCAATAATGAGTCTATAAACCTTCTTTGCGAGGAAACCATTCCTGGCAGTCCAACACCTGCTTTTGGAGGAAAAGAGGAGCCTTCGGGAACGCAATTAGCTACAGAAAGTACTTTATTGTTGGATAGCAACATTAAGGTTTTAGGTGTCACGGAGCCAGGTGCTTTGCTTGCTAATATGAATAATTCCCCAAATGATTCAGCAAGCCATGATGACAGCAGTGAGGATGTAAAAAAACAAGTTGATATAGAAAACGAAATATCCCCTCGAAAACGTCGGCGCCCCAGAAAGCAATCAGAAATGATTATCACATCAGACCACCATACCAAACGGCGGAAACAAATGACATATATGAAAAAGATTCCAGCAGGTTCCGATAGCGACGAAAACTCTGATGGTACATCGCAACGCATTCTTGAATCTCGACATAATTTCCAACAACAATTTCAACTACAACAGCCACAGACATCAGTTGGAATTCGGTCTTGTCCCTATAACTTCTTGGTGCAATTAGATCCGAGTCTGGGCTCTGACCAATGCatagcaattttattaaaacaaattcaagAATTGCGAAAAACCTATAATGCAATCAAAATCGACCTTGCGAGTATTGATCGAAGACGTAAAAAATTACGACGACGAGAAAGGGAAAAGAAGCaacaagtgcaaaatcaacaagttaaaatttcttaa
Protein Sequence
MQQVDTDPPSLPVGTEVSAKYKGAFCEAKVSKVVRNIKVKVAYKQGLGSGIVSDDLIKVAPGQLRVGATVEVRHPDRKDLVECTVTKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLTHPEHFGNPVVGGRRGRRRGQLNDDSSDEEDESDAKEVVNEKEEHIGNVVCVEMETKKKDKEKWFPGLILAPTAQANVRIRVKDEYLVRSFKDGRYYTVPKKETTEFTREAAAKQDGQAVQAALQYLDSGALPPHWDRESLFGLNNSSSEGDGELESDSSDDEPREEKDRFVAQLYKYMDDRGTPLNKVPSIQNRDVDLYRLFRAVQKCGGYNRVTAKNQWKSIAVRLGFTSVTVSVTNLVKQAYKKFLQPYGEFHRKLGCSMLMTPRNSNRSKGRSLVRANSVASPKPIDNTKDSLNKPANNNITASSSSSSSSASSSQNIAASSVVATTTANIITVVTPSVTEESENTSESSLDNAKNKRKAVVGKVKGLVEKYEEKSRDDCDVPLSKMKMSAETPRCEDKDKAPSLKDVSAGPTLHIRDSSPPGTSAGSKKDKSQKKQTPQSDDKRNKRKKDDTIEKVDTGDFIVEVGDKLKVYYHEKKVTYEAKVIEISVQRGSPMYLVHYTGWNNRYDEWVPRERIAENITKGSKQKGRMANANSMEKQKDNPSKPPSVSSLNPTGPPNSMANILGNIPISTKLSVSSKRGRGRSDSLPPRSTTPSSVASNSSRTKSPATSGLKRRPIRSMVNTTRRTSANVSDVSLQSESDTDSDEPVRRPTRGSKEIEYKSGSLSGKLANKSINSDTDVDDEEDDTTLIIGTNINSTKGRNYDLNQIRSELRELKSPSPPYLGNDELVSKVTQPIKVESVIDVKDICSSKSKAIVESNTEVITIKQEVKQDQKDDTVKSSTDMSSETESFCDDDSQSSGKTTTLENMTKRFQQKIKAGKQQALEKLSCGNPTVERVPKVVEKIIQDSLAEKLQESLKTKPDVKKEEGLEANISDAALCKSDIDKKEDSKPKILQNELHQRSTSNIQPRFESTINSSKYSSLIIEKPVCFNKKIESGCSKKTDISRKFVTDSIESQSKKSIEPVGKEINKSEPSAACSPSSSSSSSSASASSSSHSLPDMSKLDISGGSSTSSIHLIPNKDVKLASVAPKATSPDIYEFKDPEPFEFELRKLQTTSTNISSFTTGVTSACNVSGITRKSTQKNITSQISVNEKQQPPPNPMTVLVNRKKKGSPMKEAVIDKSKLPKTDGKLNIISEGKINKIASIIPVVTKGTLDCQTNLLTLNPLSSNPSLCSNSTTQKTEVLNNTSFDTLRTSPNFNVNINALNEELAQTVQETTRALTDAFQKPKLSSLQEVAGTPPKLASPKQNDTENLMTSSKNQEENVSKLISPLPTTPIKTVIGSPFIETRKDLSNVFELSTSEGFTSLSESKDNKFEFENAKKMLSATSDAFDLEPAKYENRPTSIADKLLKAINQKKEEDKYRIDPKTEKGEDGGSSKDDVAIVKNTAELILGSDCASNEPLNINIDLAGSPMSFGSNLSLEKLPIITGSINKPIPLTSPEPKLGILESITVKNNDLTETIQKLECAIQRKTPVSGLSVTTTPNTFSEDSMDSTDSERRLVIEDVAEDACDILKSPNDSQPIGETKISILPHKTDVAVSKIVPDNILAHIRADPQIQQTTHASRPQCLSASVSFPTISAPIIVTSANRISTVLHVVADMTMEQKGPQFGNPEVQKKDKRKQEDSLSLGIENSADIETRSNENFSSRDTFSVKSFETAAPLRSASPLIDSSKQHTQRSTDVVPILVPDIPVSVVVASGAVPSVKAAAQAAAEAAAQSPTSKIQPITHLDHKTIVSKTLLPSNLIVSSEEALTIDKNSESKITFIQDTGVYIDASNDLKITPPSTVTCPSITGISANSGFYLDVRTELRPEDGVKPIHDIQHTNTEIERFNSKKVEGTLCADELASNFGVDTNNESINLLCEETIPGSPTPAFGGKEEPSGTQLATESTLLLDSNIKVLGVTEPGALLANMNNSPNDSASHDDSSEDVKKQVDIENEISPRKRRRPRKQSEMIITSDHHTKRRKQMTYMKKIPAGSDSDENSDGTSQRILESRHNFQQQFQLQQPQTSVGIRSCPYNFLVQLDPSLGSDQCIAILLKQIQELRKTYNAIKIDLASIDRRRKKLRRREREKKQQVQNQQVKIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00191148;
80% Identity
-