Basic Information

Insect: Bactrocera minax
Gene Symbol: sqz
Assembly: None
Location: JAPVRH010006386.1:172249-174609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.2e-06 9.2e-05 23.0 2.7 1 23 200 222 200 222 0.99

2 5 1.1e-07 8.6e-06 26.2 3.9 1 23 228 250 228 250 0.99

3 5 0.00069 0.053 14.3 3.6 1 21 256 278 256 280 0.94

4 5 0.017 1.3 9.9 2.8 1 20 286 305 286 308 0.92

5 5 4e-06 0.00031 21.3 2.3 1 23 317 339 317 339 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.2e-06	9.2e-05	23.0	2.7	1	23	200	222	200	222	0.99
2	5	1.1e-07	8.6e-06	26.2	3.9	1	23	228	250	228	250	0.99
3	5	0.00069	0.053	14.3	3.6	1	21	256	278	256	280	0.94
4	5	0.017	1.3	9.9	2.8	1	20	286	305	286	308	0.92
5	5	4e-06	0.00031	21.3	2.3	1	23	317	339	317	339	0.97

Sequence Information

Coding Sequence: ATGGCTGAATTGCCCGCTCCCCCAAGTGATTATCTCCATCGTTCGATCGATCAGCTGCGTTCGATGAACGAACGCAATGTTCTCTCATCATTGAGCCATCATCTGACGCCGGTAGAATTGCGCAATGCCGCACAGTTGGCGGCGCACGATTATAAACCATTCAATATCAATGAATTTCGTCAGAATGTGGAACGGTTAGATTATTCATTGAAGAATGGgcttatacaacaacaacagcagttgATTGCTGAtcatcagcagcaacagcagcaactccaacaacaacaagcgcatgaacaacagcagcagcagcaacatcatcagcaacaacaacaacagcaggcACAACAACAGGCGGCtcatcaacaacagcaacagcagcagcagcagcaacaacaacaacaacagcaacagttaCAGCTTAAACAATCATATAGTCCGCCAAATTCACCGGCCACACCCACTATGAGCGAACAACCAGAGCAGAAGTATGATCCACATGCTGCTGCTgtggaacaacaacaacgacaactcACCGTTAATCAGAAGCAACAACGCAACCAACAAGGCTCCCCTGAAGGCCGTGACGCCAAGCCCTACAAATGCACGCAATGCACAAAAACCTTCGCCAATTCCTCCTATCTCTCACAGCACACCCGCATCCATCTGGGTATTAAGCCGTATCGTTGTGAGATCTGCCAACGCAAATTCACACAGCTGTCGCACCTGCAACAACATATCCGTACACATACCGGGGATAAACCATACAAGTGCCGCCATGCCGGCTGCCCCAAAGCCTTCTCGCAACTCTCCAATTTGCAATCGCATTCTCGCTGCCACCAAACGGACAAACCATTTAAATGCAACTCCTGCTACAAATGCTTCACCGACGAATTAACGCTGCTCGAGCACATACCCAAGCACAAAGACTCGAAGCACTTGAAGACGCATATCTGCAACCTGTGTGGCAAGTCGTACACACAGGAGACCTACCTGCAGAAGCATTTGCAAAAACATGCCGAAAAGGCGGAGAAGCAACAGCAAAGGCAGGCCAGCTCAACAAGTACTGCGCAACACCATGTGCCTGCCGGCGGTATCGGTCTCAATTTGCAGCGACAGGTGGTGATGAATGCTGCTGCGGCGGCCGCCACTAGTGATCCCAATTCGTATTGGGCGAAGGTGGGCGCTGATAGTGCCGTCAATGCTACCACGCTCGCTGAAGCTatacagcagcaacaacaacaagctgcCGCTGCCGCAGCTGCAGCCGCAGCGGCtgcacaacagcagcaacaacatgtgCAGAATGGCTACAATTTTGCGGCCCTGcaacagcaccaacaacaacagcagcaggaGCTGTTGCAACACCACCAGCGGCTGGTGAATGGCGGAGCGGGTAGTGGTGGCGATAGCGCTGGCAGCGGCAACACACCCAATCACTCGCATTCGCCTAACGATGAGGGTGAGGACTTGGTGATGCGTCAAACGCCACAGCATCatctgcaacaacagcagcaacaacaacagcatcaacATCAGCATCAACAGTCACACTCACCCAATCCACTCTTAATGGGCAATGCtgctgcagcagcagcggcggcggcggccgCAGCCCAGTATGATGTGAAAACAACCAGCGCCTTTACGCCCATCAACACGGCGCCACCACATTTAAATGCACTGGCTGCACAACAACGTCCACCCGCCGCCGCAGCGTACCTGTACCAGCAGAATGCCGCCGCAGCTGCCGGTTTCCCAACACAACTTATCTCATTGCATCAGATACGCAACTATGCGCATCAGCCTACTGCAGCGGCGGCAGCGGGGCTGTTGGCCAGCGATCACCTGCTCGGTTTGACTGGCGTGACCGCGGGCGGTGCCGGCAAGGATAAGGGTCAATAG
Protein Sequence: MAELPAPPSDYLHRSIDQLRSMNERNVLSSLSHHLTPVELRNAAQLAAHDYKPFNINEFRQNVERLDYSLKNGLIQQQQQLIADHQQQQQQLQQQQAHEQQQQQQHHQQQQQQQAQQQAAHQQQQQQQQQQQQQQQQQLQLKQSYSPPNSPATPTMSEQPEQKYDPHAAAVEQQQRQLTVNQKQQRNQQGSPEGRDAKPYKCTQCTKTFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHAGCPKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFTDELTLLEHIPKHKDSKHLKTHICNLCGKSYTQETYLQKHLQKHAEKAEKQQQRQASSTSTAQHHVPAGGIGLNLQRQVVMNAAAAAATSDPNSYWAKVGADSAVNATTLAEAIQQQQQQAAAAAAAAAAAAQQQQQHVQNGYNFAALQQHQQQQQQELLQHHQRLVNGGAGSGGDSAGSGNTPNHSHSPNDEGEDLVMRQTPQHHLQQQQQQQQHQHQHQQSHSPNPLLMGNAAAAAAAAAAAAQYDVKTTSAFTPINTAPPHLNALAAQQRPPAAAAYLYQQNAAAAAGFPTQLISLHQIRNYAHQPTAAAAAGLLASDHLLGLTGVTAGGAGKDKGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01505896;
90% Identity: iTF_00091766;
80% Identity: -