Bmin001344.1
Basic Information
- Insect
- Bactrocera minax
- Gene Symbol
- -
- Assembly
- None
- Location
- JAPVRH010000767.1:63487-65432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.69 53 4.8 0.3 2 23 235 257 234 257 0.87 2 9 8 6.2e+02 1.5 0.1 6 14 266 274 266 284 0.66 3 9 2.9e-05 0.0022 18.6 1.4 1 23 290 313 290 313 0.98 4 9 0.00033 0.025 15.3 7.5 3 23 325 345 323 345 0.97 5 9 8.4e-06 0.00065 20.3 0.2 1 23 351 374 351 374 0.94 6 9 4e-05 0.0031 18.2 0.7 1 23 380 402 380 402 0.95 7 9 0.00072 0.056 14.2 2.5 3 23 439 460 438 460 0.96 8 9 1.3e-06 0.0001 22.9 0.9 2 23 467 488 466 488 0.97 9 9 0.00011 0.0088 16.7 5.2 1 23 494 517 494 517 0.98
Sequence Information
- Coding Sequence
- ATGGGAATGATTTGTCGATTGTGCTTGCGGATTTTAATTCAGGAAAATGCCATCTGTTTATTTGAGTCTCCTCATACGGAATCTAAACTAATTAAACTAATAACAAAGTATTTCCACTTGGAGGTAGCGCAAGATGATCCTATATCAACTTCATTGTGTGAAGATTGCGGTGATCATTTGGAAGAGTTCCATAAGTTTTGGGTATTTGTGGATTTAAAACAGAGCTCGTTGGGCAGTGAGTTTCTAGCCGTAAAATGTAGCAAAATAGAGGAAGATACACCGGTATTAATAGATGTTACGGGAGAGAACATTGATAATCAAGAAGAAATACTCTTAGATTTGAAAGATATACCAACTTCACAAGAAACATATATCAACAGCTTCGACTTAGCAACGACCTCCGAAAGTATAAATGTCACCCCAGACATCAAAATCGATTTAGATACGGAATGTGGAAATATAGTAGCAGCAGATGATTGGAGAAATAACGATGAGTCATTTGAAgATGATATtccattaataaatttgaaggaaaaaattgaaaatattacaaggcccactaaaaataatgtaaaaagttATGCTCGTGTTAAGAAAGTCAAACGGAAATGTAAAAACGTTGATTCCCTTAgggtaaaaaatgtattgagaAAGGAGGCGTCAAAAGTAAATGAtgaaattattggaaattttatgttgCTGAACTGTGATATATGTGGTTTATGTGTTGAGGCATATAATGACCTCCGTTTACATTTctcacaaatacataaaagaaCGGCATATGTGAAGTGTTGTGGTAAAACATTCCAGAAACCAAGTTACTCATTAGCGGAACACGTTCAGTGGCATACCAACCCCagtaaatttaaATGTGAAGATTGCGGAAAACAGTTGAAGTCAAGTAAATGTTTGGCAAgtcacattaaaataattcattctAAAAAGGAACTTAGTCACGAAACTGTCTGCTGTCATATCTGTTCTAAAGTATTTCGTGGGCAGAAATGTCTCAATAATCATATACGAAAACATGAAGACAATCGAGAATACAGCTGCGAAATATGTACcaaaagctTTGCAACTCCTCAACGCTTGCGCAAACACATAGAAGCCATACACGAGGATCTTCATCGTCACATATGTGACGTATGTGGTAAAGCATTCAAATTTAAGCCATCTTTTGAACGGCATGTGCTTGAGCATCAAGGCATTATAGAACCACCTGTTCAATGTGATATTTGTGGGGAATGGTCAAAGAATAAACATGTCCACCGATTACATCAGTTTAAGCATAATAATACCGACGCGGACTGTAAGTATTGTGGACGGAAATGTCGTTCACGCACCGCCTTAAGAggtcatataaattatatgcacaAGAAGAAATACGATTTACAATGCAGCTTTTGCgacaaaacatttaaagagAGTAGAAACCTAGAGGAGCATATGGCCACACATACGGGAGCGCAATTGTACTCTTGTCCCCACTGCTCGAAAGAATGCCGCTCAAAATcgaatatgtatgttcatataaAACGTATGCATGCAAACGAATGGATCCAATCCAAAATGGCGCGATCAAATGATCctaatttgaaagcaaatcaaattaatgtaagctga
- Protein Sequence
- MGMICRLCLRILIQENAICLFESPHTESKLIKLITKYFHLEVAQDDPISTSLCEDCGDHLEEFHKFWVFVDLKQSSLGSEFLAVKCSKIEEDTPVLIDVTGENIDNQEEILLDLKDIPTSQETYINSFDLATTSESINVTPDIKIDLDTECGNIVAADDWRNNDESFEDDIPLINLKEKIENITRPTKNNVKSYARVKKVKRKCKNVDSLRVKNVLRKEASKVNDEIIGNFMLLNCDICGLCVEAYNDLRLHFSQIHKRTAYVKCCGKTFQKPSYSLAEHVQWHTNPSKFKCEDCGKQLKSSKCLASHIKIIHSKKELSHETVCCHICSKVFRGQKCLNNHIRKHEDNREYSCEICTKSFATPQRLRKHIEAIHEDLHRHICDVCGKAFKFKPSFERHVLEHQGIIEPPVQCDICGEWSKNKHVHRLHQFKHNNTDADCKYCGRKCRSRTALRGHINYMHKKKYDLQCSFCDKTFKESRNLEEHMATHTGAQLYSCPHCSKECRSKSNMYVHIKRMHANEWIQSKMARSNDPNLKANQINVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00193009; iTF_00190197; iTF_00191557; iTF_00193813; iTF_01563134; iTF_01563996;
- 90% Identity
- -
- 80% Identity
- -