Bmin006632.1
Basic Information
- Insect
- Bactrocera minax
- Gene Symbol
- -
- Assembly
- None
- Location
- JAPVRH010005402.1:54717-56258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0035 0.27 12.1 3.2 1 23 185 208 185 208 0.95 2 8 0.00022 0.017 15.9 2.1 1 20 222 241 222 244 0.94 3 8 6.4e-07 4.9e-05 23.8 0.5 3 23 249 269 247 269 0.96 4 8 0.00026 0.02 15.6 1.9 1 23 275 297 275 297 0.98 5 8 5.6e-05 0.0043 17.7 2.2 2 23 304 325 303 325 0.97 6 8 5.4e-05 0.0041 17.8 0.8 2 23 332 353 332 353 0.97 7 8 0.00017 0.013 16.2 1.6 1 23 359 381 359 381 0.96 8 8 1.2e-08 9e-07 29.3 0.6 1 23 387 409 387 409 0.98
Sequence Information
- Coding Sequence
- atgttaaaactttTGCCGCCGGATACGagcaaatttcataatttcaaatgCGGTGAGATATTCTGCCTCAGTTCGAATAACTACAATGTGGCGTGCTGTTTATGCGGATCAAATGTAGTGTTCGAACAATTTCCACAACATTTCCAGGAGGAACATTTGACGCCGAAAGCCGAAAAAGTGGAAAAGCCCACCATAGATACAAGTACAAGTGATAGCATTAAGATTGATGTAGATCCCATCAAAAGCGAAGAAGAATATATTAGTGACCATGGCGATGGTTCTGTCGGTTTCGAAGCTCCAGATTCAGAATCCGAAGAAGTAGTTGATGAAAAGCCCTTCGACTTTGTTGACTTACAAAATCTAGGAGTAAATATTGTTGAACCGGAAAGCAAAcgtaagcaaaaaaaagttgaagatGTTGAAGATGTTGACGACATCAGTGACACGAAGTCGTGGGATGATAAGAGTGATGTTGAAGATGAAGATTGGCGTCCTCAAAATTCATCGGGCGACGAGAAGCCAAAGCCGCAAGATGACATTGATTCACTTCCATATCCATGTCCGGACTGTATGCGTTCGTATAAAACTAAACGCAGTATGTTAACGCATCATCGACAAACACAtaatccaaaaacaaaaaaatcgaaagagccaaaattgaatttcaaatgtgATGAATGTGGAGAATGTTTTAAAGCTGAAAGAAATCTACGTGCCCACAAGTGGAAGCATACTGGCATAATATGTGATATTTGTGGCAAGAAGTTCTCTCAAACTGGTAACCTGCAACGACATAAAATACGTCACACCGGCATAAAGGCGCATAAATGTCAGGAGTGCGGCAATGACTTCTTTACTGATAAAGAGTTGAAGGCACACATGTTGCGTCATACCGGCGAGAGGCCTgttgtttgtgagatatgtggTAAACGCTGCCGTGATCATGGTGTATACAAAGCGCATATGCGGCGACACACAGGCGAACGACCAGCTAAATGCAATGTTTGCGGAAAAGCTTTTTATAGTTTCCACGATTTAAATGTGCACGCGGTGACACATAGCACCGAACGACCATTTGCATGCGATATGTGCGGCTCAACGTTCCAGAGAAAAAAATCGCTACGCgtacacaaaaaattacattctAAAGATCGGAAACATGAATGCAAAGTTTGCGGCAAAACATTTGCACAATCTGGAGGTTTGAATGCGCATATGCGAACCCACGATGCCGCTTTAAGTCGGAGCATTGTAGGCAATACCAATGCCAGTATTAGCGCAATACCTGGCCCTATAGTTGCAGATGGTGTCAGTGTCAatgttggtgttggtggtaCTAATGTCAACATGGGCATTGCTAGTGGTATTGGTGTGGCTCTTGGTACGGTAGTCAATCCAGTTAACTCAATAGGGGAGGCATTGTTGGGTGTGACTGGTGTACTGAGTGGGACCGGCTCAACAATAGATACTGTCAACAATTAG
- Protein Sequence
- MLKLLPPDTSKFHNFKCGEIFCLSSNNYNVACCLCGSNVVFEQFPQHFQEEHLTPKAEKVEKPTIDTSTSDSIKIDVDPIKSEEEYISDHGDGSVGFEAPDSESEEVVDEKPFDFVDLQNLGVNIVEPESKRKQKKVEDVEDVDDISDTKSWDDKSDVEDEDWRPQNSSGDEKPKPQDDIDSLPYPCPDCMRSYKTKRSMLTHHRQTHNPKTKKSKEPKLNFKCDECGECFKAERNLRAHKWKHTGIICDICGKKFSQTGNLQRHKIRHTGIKAHKCQECGNDFFTDKELKAHMLRHTGERPVVCEICGKRCRDHGVYKAHMRRHTGERPAKCNVCGKAFYSFHDLNVHAVTHSTERPFACDMCGSTFQRKKSLRVHKKLHSKDRKHECKVCGKTFAQSGGLNAHMRTHDAALSRSIVGNTNASISAIPGPIVADGVSVNVGVGGTNVNMGIASGIGVALGTVVNPVNSIGEALLGVTGVLSGTGSTIDTVNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083324;
- 90% Identity
- iTF_00192993; iTF_00193765; iTF_00190159; iTF_00191540; iTF_01563995; iTF_01563133;
- 80% Identity
- -