Bmin006181.1
Basic Information
- Insect
- Bactrocera minax
- Gene Symbol
- -
- Assembly
- None
- Location
- JAPVRH010005184.1:1-6806[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.81 63 4.6 0.1 1 23 64 87 64 87 0.91 2 12 2.1e-06 0.00016 22.2 0.7 1 23 101 123 101 123 0.99 3 12 0.002 0.15 12.8 3.3 1 23 130 152 130 152 0.99 4 12 8.6e-07 6.6e-05 23.4 1.2 1 23 158 180 158 180 0.99 5 12 0.0017 0.13 13.1 4.7 1 23 187 209 187 209 0.98 6 12 5.7e-06 0.00044 20.8 1.2 1 23 215 237 215 237 0.96 7 12 2.7e-05 0.002 18.7 0.3 1 23 243 265 243 265 0.97 8 12 1.6e-06 0.00012 22.6 0.6 1 23 271 294 271 294 0.98 9 12 9.3e-06 0.00071 20.2 2.6 1 23 300 323 300 323 0.95 10 12 9.6e-05 0.0074 17.0 1.8 1 23 329 351 329 351 0.97 11 12 5.8e-05 0.0045 17.7 1.5 1 23 357 379 357 379 0.97 12 12 0.0019 0.15 12.9 0.1 1 22 385 406 385 409 0.92
Sequence Information
- Coding Sequence
- TCCActataaattatgcaattacAACTGACAATCCTGGGGATGTTAACGTCATGACAGTGGATGCGCAAATTAAGATGGGTTTTGAACAAGAAAACAATCTATACTTTTGCTTATTGTGCGAGGAACAAAGGACAATGACAACAGAACCATTTGCTGAGCATATGCTCAAAAAtcatgatttaaatttttattcttgtgAGATTTGTTCTGCTGGTTTCCTTTCAATTGAAAGTATGAAAGAACATTTAGAAAGCATGCATTCAAATACATCTACCATTGAACAAGTTGAAAGCTTAGAATATACATGTGATGAATGCCAACAAGTTTTTAGCAATAACCAACTGTTGCGTGTTCACAAACGAATTCACAGCAACGTTTCCTTGCAATACGAATGTTCCGAGTGTCAGAAGAGATACAGTTGCCgaaaattgctgcttgatCACATGAACATGCACACAGGGCGTCGACCGTACAAGTGCACGAAATGTCCAAAGGACTTCGCATCAAAATATACATTGCAAGGGCATATGAAAATTCATAGTGAACGATTACGTCCGTATAAATGtgataaatgcaataaagcaTTTCTTAGCCAACAAACCCTTACGCATCATAAGAAGCTACACATGGGAGAAAAGTCATTCATATGTGATATTTGCTCAAAGACCTTTAGCACCCAACACAACTTAGATGTTCATAAGATTGTCCATACTGGTCAGCGACCATTCATTTGTCGAACTTGTGGAAAATCTTTCGCACGTCGTGCTGAAATTAAAGATCATGAACGTATACATACTGGAGAAAAACCCTATAAATGTGATATGTGCGATGCTGCATTCGCTCAGCGCTCAAACTTGATGACACACCGGAAGTCCACACATTTAAATGAGAAGTTACACAAATGCGATCAGTGCGATCGTTCGTTTAAAAGACGCCGTTTGTTACAATATCACATCAATGCTGTACACACAGGTGTGCGCCCTCACGAATGCGAAATATGTGGTTCTTCATTCGTTTACCCTGAACATAAGAAAAAGCATATGCTTATACACGGAAATACTAAACCATATACTTGTGAAATATGTGGCAAGGAATTTAACAGTTGTGCTAACCGTAATGCTCATCGTTACGTACATAGCACAAAAAAGCCATATGAGTGTCTGAAATGCGGTTCCGGCTTCATGCGCAAACCTTTGTTGTTGACACATATGAAACTTGTAGGGCATACGAACGACACAATTATAATTAACCAACCACATATTAGTGATAAAAGGACGCTGACTTTAGAAAGAGAAATAAGCCTCGTTGACTCCTGTGATGAAACTAACGAAGTTCCCTCAAATTCCTCACAAGAATCAAATTCAAGTGTTTGTAATGAAGCACTAATTACGCAGCACAGAGGAGAAGTTATAAGCGATATTTCCGAAGTGGATAGCGTGCAGTACCTGCAATTTGATGATTTAGACAAAGATGGTCATCAAATAATAACTTGGGTAGACATTGGACGAGATAAAGatcataattaa
- Protein Sequence
- STINYAITTDNPGDVNVMTVDAQIKMGFEQENNLYFCLLCEEQRTMTTEPFAEHMLKNHDLNFYSCEICSAGFLSIESMKEHLESMHSNTSTIEQVESLEYTCDECQQVFSNNQLLRVHKRIHSNVSLQYECSECQKRYSCRKLLLDHMNMHTGRRPYKCTKCPKDFASKYTLQGHMKIHSERLRPYKCDKCNKAFLSQQTLTHHKKLHMGEKSFICDICSKTFSTQHNLDVHKIVHTGQRPFICRTCGKSFARRAEIKDHERIHTGEKPYKCDMCDAAFAQRSNLMTHRKSTHLNEKLHKCDQCDRSFKRRRLLQYHINAVHTGVRPHECEICGSSFVYPEHKKKHMLIHGNTKPYTCEICGKEFNSCANRNAHRYVHSTKKPYECLKCGSGFMRKPLLLTHMKLVGHTNDTIIINQPHISDKRTLTLEREISLVDSCDETNEVPSNSSQESNSSVCNEALITQHRGEVISDISEVDSVQYLQFDDLDKDGHQIITWVDIGRDKDHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00190117;
- 90% Identity
- -
- 80% Identity
- -