Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00012 0.18 12.1 0.5 18 43 40 62 32 63 0.86

2 6 3.3e-05 0.052 13.8 0.0 12 44 78 107 73 107 0.90

3 6 0.14 2.2e+02 2.3 0.3 17 29 135 147 126 158 0.72

4 6 0.0019 3 8.2 1.2 18 40 191 210 182 212 0.89

5 6 0.1 1.6e+02 2.7 2.0 18 41 219 239 217 241 0.87

6 6 0.064 1e+02 3.3 2.4 14 29 243 258 236 268 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00012	0.18	12.1	0.5	18	43	40	62	32	63	0.86
2	6	3.3e-05	0.052	13.8	0.0	12	44	78	107	73	107	0.90
3	6	0.14	2.2e+02	2.3	0.3	17	29	135	147	126	158	0.72
4	6	0.0019	3	8.2	1.2	18	40	191	210	182	212	0.89
5	6	0.1	1.6e+02	2.7	2.0	18	41	219	239	217	241	0.87
6	6	0.064	1e+02	3.3	2.4	14	29	243	258	236	268	0.72

Coding Sequence: ATGAGCTTCAATTTGAGACATAAAAGAATATCCCAAAATAATGGTGCTATTGGTAAAAAGCAACCTCGCTTCGCAATCGGTTCTCGTCTGGGAACATTTGTCACAACCAATTGGCGCAAATGTCCTCATTGTGAACGTGTTTTTGCCAGAAATGTAACGTTGGAAAAGCATCTACAAACagcacatacaaatgtgcCAGCGGAGTGTATTGCTGCTATTGCGCCTAAACCTACTGAGGATAAACCTATACAATGCGATCATTGTCCACGTACTTTTGCCCGACACTTTGCATTGGAACGACACCTTAGAGCCATGCACCCGGCGATTACGATTCCCGCAAATAAAGTTGAATCGAATACAAATTCCACTGACActgcaaaaacgaaaaaaactTACAAGCGTGGAATATGCCCACACTGTGGTCGTAGTTTCGCTCAAGCAAGCTTAGTAATACATATACGCCGACATACAGGTGAAAAGCCATACCAATGTGATGAATGTCAAAAGGGTTTTCCTCGACGTCAAGATTTAGTCGTACATAAGAGACAACATACAGGTGAAAGACCACATGTATGCACTATTTGCGGAAAATCGTTTACAAGGCCAAATAAATTATCGAGGCATATGCGTATACATACGGGACTACGGCCGTACAAATGTTCGGAATGTCATAAATCATTCACACAATCGAATGACCTGCGTATCCATATGCGTCGACATACTGGAGAAAAACcttataaatgcaatatttgcaaCGAGGCTTTTATAAGCGGTACAGCGCTCAAAGCTCACCGTATGGCAAATAACCATGCTGCACCGCCAGATGCCGAAAACGATCCATATGCGAAATGTCgcttaaataaagcaattagATTTGATCCTTCCGAGTGA
Protein Sequence: MSFNLRHKRISQNNGAIGKKQPRFAIGSRLGTFVTTNWRKCPHCERVFARNVTLEKHLQTAHTNVPAECIAAIAPKPTEDKPIQCDHCPRTFARHFALERHLRAMHPAITIPANKVESNTNSTDTAKTKKTYKRGICPHCGRSFAQASLVIHIRRHTGEKPYQCDECQKGFPRRQDLVVHKRQHTGERPHVCTICGKSFTRPNKLSRHMRIHTGLRPYKCSECHKSFTQSNDLRIHMRRHTGEKPYKCNICNEAFISGTALKAHRMANNHAAPPDAENDPYAKCRLNKAIRFDPSE

Sequence clustering based on sequence similarity using MMseqs2