Basic Information

Insect: Bactrocera latifrons
Gene Symbol: -
Assembly: GCA_001853355.1
Location: NW:1360759-1362373[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5e-06 8.2e-05 22.4 1.7 1 23 214 237 214 237 0.97

2 7 4.9e-05 0.0027 17.6 3.6 1 23 243 266 243 266 0.97

3 7 1.8e-05 0.001 18.9 3.5 1 23 276 298 276 298 0.97

4 7 7.3e-06 0.0004 20.2 0.1 2 23 306 327 306 327 0.97

5 7 0.086 4.8 7.4 0.1 2 23 334 356 333 356 0.86

6 7 0.0037 0.21 11.6 3.2 1 23 362 384 362 384 0.87

7 7 1.7e-05 0.00093 19.0 0.5 1 23 390 412 390 412 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5e-06	8.2e-05	22.4	1.7	1	23	214	237	214	237	0.97
2	7	4.9e-05	0.0027	17.6	3.6	1	23	243	266	243	266	0.97
3	7	1.8e-05	0.001	18.9	3.5	1	23	276	298	276	298	0.97
4	7	7.3e-06	0.0004	20.2	0.1	2	23	306	327	306	327	0.97
5	7	0.086	4.8	7.4	0.1	2	23	334	356	333	356	0.86
6	7	0.0037	0.21	11.6	3.2	1	23	362	384	362	384	0.87
7	7	1.7e-05	0.00093	19.0	0.5	1	23	390	412	390	412	0.96

Sequence Information

Coding Sequence: atgtCGTTATTAACAAAGAATAATGCAAATCAGCACTGCCGTACTTGTTTAAAAAGGCTCGGTGCTAATACAGACTGTTTTTCTGGTAATGTTGATCAAGACGATATACCGGATAGCAAGGAGCTGCAATTTAACATTTATAGCGATCCTGAGCTGCAAcaactcatatatatgtatatagatggtCCCAGCAGAAGTAACACGGCAAATGTTGTTGATAATGAATTGCCAGCACACATATGCCTCGCTTGCTACAGTTTGCTCAACAACTTTGCATTATTCCGTAAAAGGGCTCAACAGAACGCCGAAAAATTACGCACTGTTCTTAATTGTAGTAGTGGCATGATAAAAGTTGAAATCAACTATGACGAAgatgaaaatcaatttatggaaaaaagagAACGTGTGGAAAACTTGGTTCAGGATTGCAAATTGCAATTTAGGGATGCGCTTATGGAAGACGAGCAAGTTTTTTTCGATACATCGGTAGCAAACTTAGCAGACACAGAACTAAATGATGAGATGGCAGATCCTTTTGCACCTGCATTGCAAACGGCTGTCGATTGTGACAGTAAAACAGTTGCTGGAAAGGAGGACGACATTAAGAAAGAAGAGCCTACATTAGATAACAACGAAAAGTATAAATGTACACACTGCACACAGACGTATGCTTTCAATTCAGAATTGCAAGCACATATGCGGGAAGCGCACGATAATAAGTTGCCGTTTACGTGTAGTCATTGCGACAAAGCCTACAGATATATTCGCAGTCTACAGGAACATATGAAGCAAAAACATCAAACAGTACTAAATCCAGACGCCCAGTTTAAGTGCAATGTGTGCCCAAAGGCATTCACAACAGATTTGTCACTAAAAAAACATATGTGTTTTCATATTAAAGAAGATATGTCTCGTGTTTGTGGAATTTGTGGTAAACGATTTCCGGTAAAAAATTTGCTAGTGGATCATTTACGCACACATTCGACAGATGGCAGAATACCTTGTGGTCAGTGCGATAAAAGTTTTATGTGGTATCAAGATCTATTGAATCATGAACTTTCGGCACATCTGAAAGAGAAACCGTTTCCCTGTAAACTTTGTGATAAATCATTTCAAACGCAAAAGTCTCTACGCTTCCACAATTACAGACATTCTGGAGAAAAACCATACCTTTGTGACGTTTGTGGAAAGGACTTCCGTCAACCAACGGCTATGAAACAACACCGGCTGAAACATTTTAAAGATGATACGGTTGAAAAAAAGCTAGATGCTtga
Protein Sequence: MSLLTKNNANQHCRTCLKRLGANTDCFSGNVDQDDIPDSKELQFNIYSDPELQQLIYMYIDGPSRSNTANVVDNELPAHICLACYSLLNNFALFRKRAQQNAEKLRTVLNCSSGMIKVEINYDEDENQFMEKRERVENLVQDCKLQFRDALMEDEQVFFDTSVANLADTELNDEMADPFAPALQTAVDCDSKTVAGKEDDIKKEEPTLDNNEKYKCTHCTQTYAFNSELQAHMREAHDNKLPFTCSHCDKAYRYIRSLQEHMKQKHQTVLNPDAQFKCNVCPKAFTTDLSLKKHMCFHIKEDMSRVCGICGKRFPVKNLLVDHLRTHSTDGRIPCGQCDKSFMWYQDLLNHELSAHLKEKPFPCKLCDKSFQTQKSLRFHNYRHSGEKPYLCDVCGKDFRQPTAMKQHRLKHFKDDTVEKKLDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01563196;
90% Identity: iTF_00193826;
80% Identity: -