Blat012126.1
Basic Information
- Insect
- Bactrocera latifrons
- Gene Symbol
- -
- Assembly
- GCA_001853355.1
- Location
- NW:592556-602535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0016 0.091 12.8 0.2 1 23 461 486 461 486 0.97 2 12 1.5e-05 0.00085 19.2 2.7 1 23 491 514 491 514 0.96 3 12 5.2e-05 0.0029 17.5 1.8 3 23 521 541 519 541 0.97 4 12 1.8 1e+02 3.2 8.9 2 23 548 569 547 569 0.94 5 12 0.00045 0.025 14.5 3.3 3 23 578 599 577 599 0.95 6 12 0.01 0.56 10.3 1.0 1 23 605 628 605 628 0.95 7 12 0.024 1.3 9.1 0.3 2 23 639 661 638 661 0.96 8 12 0.00014 0.008 16.1 0.1 1 23 691 713 691 713 0.97 9 12 0.00017 0.0097 15.8 1.4 1 23 720 744 720 744 0.97 10 12 0.00034 0.019 14.9 0.2 3 23 752 772 751 772 0.97 11 12 0.0054 0.3 11.1 0.3 1 23 779 801 779 801 0.98 12 12 0.00025 0.014 15.4 3.7 1 23 807 830 807 830 0.98
Sequence Information
- Coding Sequence
- ATGGAGACATGCAGAACCTGTGCGAGATGTGATTTTGAGGACGAAACCAAATGGTTCGACTTATTTCACACAACGCGTTGTACGAGAGAAATTGAAGAGATGCGTGTGGAGTTCAATAATTGGCATTTGCagATTTCACCCAACGACGGATTGCCACAGAAAATCTGTTCCGATtgcttttcgaaattttgtaatGTGTTTACCTTTCGCATGCAATGCCAGCAAGCACAAGTGAAGCTAAATAATATATTCGATAAGATCGAAACACAAAGTATGGACGATGACCGCTTCGAGGATAATCTTGAAGAATTAAGTGCTCAGCTGTTGCGAATTGTAGAGGAAAATGAACGACAAATAACGAATTCAACTTATAACGAACAAAACTGCCAAATAGTTGATTGTACTGCCGCTGGTGTTGACACCACCGTTTCGCCCAATGCTACTCCTTCAGCTGCTGCCATAGTGATGTTGGATATGCTTGATGAAAATAGTGCTAACAATTACACCACCACCGCCACGGCAACGACTGGATCCAGTGGAGTGTGTGAGAGAGTCGAACAGTATACTGATGACATTTTAACAGTCCAAACAGAGGTTTCACCCAAAACAATCGAAGACTCTTTCTtggcaaaaacaatttcaataacaaatgaaaataatgcaaCTGCTGCCACCATAACTGAAGCTAACATTTACACTGCCGGCGTTGAATGTCAAAGTGAAGCGGAAATGCAAATGACAAAGTTGACGACTGTAACTGTTAAAACAATGGCAGTCGATAAAGAAGTGGAAGAGGTAATAGTAAAAGAaggaaataaaaacgaaaatgaaatagaattaaaaatggAACACGAAGAGGACGATATAAGCGAGCAAATACATTTACACGTAGATGATATAATTGAAGAAGATTTTACGCTCGATGATCAACTGGTGGAGGAGAAGGCAGATACAACATTAAGTGCAGACAGATCATTGGACCGTGTCCTTGCTCAAGATGGCTGCTATTTAAATGTAATGAGCGGAAATGTGTCACAACCTGAAGGTTATGCCGAAGAAAGTGTGCCTTTTGCGGAAGCTGTTGAAGATGAGAATGACCTTTATGAAGAAGATGAAGGAGTATTGGAAGCATTCGAACCCGTCACACTCCCAACGAATACCTACAATACAAATAACAATACTATTTTAGCATCACAATATGTTATTCACTCGTCTGCAACGAACAATGGCTACAGTCAAACAGTGGGCCAACCACCGGATGTTAGCATTGTTTATGAGTGTAAATACTGCCACAAAACCAAAGATACGCCAAGCACTCATTTCGAAACTCAACAGACATTACTCGAGCACATAACACACATGCACAATGCCGAGTACCCATTTACATGCCCGCAACGCGGTTGTACGGAGGGTTTTCGCGACGCCGCCTCACGCACGGTCCACATGAAAAGCGAGCATGTGGCCAAACATTATGAGTGTGATGTGTGCGGCAAAAAGTATGCCGATCGCTTTAACTTACGCCATCACTACGAGAAATTCCACAGCGAGACCGATTTTGGGTGTGACACTTGCGATAAACGTTTCTATTCGCGTAAAAGTCTTAATTACCATATGAAGTGGCACAATCCGGAATTGTTGTTGCACTGTAGTCACTGCGATCGTTTGTTTATTAATCAGCGACACTTGAAGTGTCACGAAGAAACGCACAACGGGGTGAGGAATAGTGAATTTTGTACGTTTTGTGGTAAAACGTTCATTCACTTGAAAACTTTGCGTTGGCATTTGTATCGACAACATGGCGGCGAAAAACCATACAAGTGCGGCCACTGCACTGAGGTTTTCGCCTCGTATCTGGAGAAGCGCATACATATGCTGGAGAATCATTTGGAGAACCTCACAACCATCGAACGCACCGAATGCATGCTCTGCCGTGAACGCTACGAAGATGAACGCGAGCTGAGCGAACACATACGTAGCAAACATGTTGAAAGGCCGAAGTCTTCCGTGCTGCTAATAGCGAACAATAAACGAGTGGTGCGCAGTAAGCGACAGAAGAATTATAGTGGAATCTTCCAGTGTGATATTTGCGCCCAGCGTTTCAATATGAAATCGGCATTGGAGCGACACGCGGCGGTGCATTCAAGTATTGGCAGGCCACACAAATGCCCAGTGGAGTCGTGTGCGAAGCGTTTCAAGCGTGCGCAGGATATGAATTGGCACATGAAGACGCATTCGAACGAGAAGCCGAACATTTGCGATGTATGCGGCAAAGGATTTGCCCTGAAATATGTGCTGAATCAGCACAAGCGGAGCCATGAAGttcttgagaaaaatttcaaatgcgtGATCTGCGGACGTGCCTATCTCTTTGAGAAATCGCTGCGTGTGCATGAACGAGTACACACGGGTGATACCTACTACCGCTGCGATTTGTGTGGCGAAAACTTTGTTACGCACATGAAATTCAAAAcTCATATGATGAAAAAACATGATCCGGAGACAACAAATCTTGAGGATTACAATTTGGATGCCTTTGAGGAACAGCTATATGAACAGTAG
- Protein Sequence
- METCRTCARCDFEDETKWFDLFHTTRCTREIEEMRVEFNNWHLQISPNDGLPQKICSDCFSKFCNVFTFRMQCQQAQVKLNNIFDKIETQSMDDDRFEDNLEELSAQLLRIVEENERQITNSTYNEQNCQIVDCTAAGVDTTVSPNATPSAAAIVMLDMLDENSANNYTTTATATTGSSGVCERVEQYTDDILTVQTEVSPKTIEDSFLAKTISITNENNATAATITEANIYTAGVECQSEAEMQMTKLTTVTVKTMAVDKEVEEVIVKEGNKNENEIELKMEHEEDDISEQIHLHVDDIIEEDFTLDDQLVEEKADTTLSADRSLDRVLAQDGCYLNVMSGNVSQPEGYAEESVPFAEAVEDENDLYEEDEGVLEAFEPVTLPTNTYNTNNNTILASQYVIHSSATNNGYSQTVGQPPDVSIVYECKYCHKTKDTPSTHFETQQTLLEHITHMHNAEYPFTCPQRGCTEGFRDAASRTVHMKSEHVAKHYECDVCGKKYADRFNLRHHYEKFHSETDFGCDTCDKRFYSRKSLNYHMKWHNPELLLHCSHCDRLFINQRHLKCHEETHNGVRNSEFCTFCGKTFIHLKTLRWHLYRQHGGEKPYKCGHCTEVFASYLEKRIHMLENHLENLTTIERTECMLCRERYEDERELSEHIRSKHVERPKSSVLLIANNKRVVRSKRQKNYSGIFQCDICAQRFNMKSALERHAAVHSSIGRPHKCPVESCAKRFKRAQDMNWHMKTHSNEKPNICDVCGKGFALKYVLNQHKRSHEVLEKNFKCVICGRAYLFEKSLRVHERVHTGDTYYRCDLCGENFVTHMKFKTHMMKKHDPETTNLEDYNLDAFEEQLYEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083344;
- 90% Identity
- iTF_00193799;
- 80% Identity
- -