Blat001270.1
Basic Information
- Insect
- Bactrocera latifrons
- Gene Symbol
- -
- Assembly
- GCA_001853355.1
- Location
- NW:25565-216754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.9 3.8e+02 1.4 1.2 2 19 84 101 83 106 0.86 2 20 1.4 78 3.5 0.0 1 23 113 138 113 138 0.91 3 20 0.06 3.4 7.8 3.6 2 19 149 166 149 169 0.93 4 20 8.3 4.6e+02 1.1 2.9 2 22 181 201 181 202 0.78 5 20 0.053 3 8.0 0.3 2 23 210 232 209 232 0.94 6 20 9.3e-05 0.0052 16.7 0.1 3 23 240 260 238 260 0.96 7 20 0.0002 0.011 15.7 1.6 1 23 266 289 266 289 0.91 8 20 0.00049 0.027 14.4 0.2 1 23 294 316 294 316 0.98 9 20 0.21 11 6.2 0.2 1 20 325 344 325 346 0.95 10 20 0.00068 0.038 14.0 1.5 1 23 365 389 365 389 0.91 11 20 0.3 17 5.6 0.2 1 23 394 416 394 416 0.94 12 20 0.00089 0.05 13.6 0.2 2 23 433 457 432 457 0.92 13 20 0.0016 0.088 12.8 0.2 2 21 461 480 461 481 0.95 14 20 0.0019 0.11 12.6 0.9 2 23 488 510 487 510 0.94 15 20 0.0031 0.17 11.9 0.2 2 23 516 538 515 538 0.94 16 20 0.0069 0.38 10.8 1.0 3 23 543 564 542 564 0.96 17 20 0.058 3.2 7.9 2.7 1 23 570 593 570 593 0.88 18 20 0.0012 0.068 13.2 0.9 1 23 598 620 598 620 0.98 19 20 4.3e-07 2.4e-05 24.0 3.7 1 23 626 648 626 648 0.99 20 20 0.0053 0.3 11.2 0.1 1 23 654 682 654 682 0.86
Sequence Information
- Coding Sequence
- atggaCATCGCTGTAAATAAAACGATGAGTGAATTAAATAGTGAGGACGATGCCTTTTTCGACGAACTAATAGAAGATGAGAATGCTGATGACGAATCTGTACCCAACTTTGCGTTTCCAAATCTCAAAGGTGATCCTGATTTGCTTTGTGAATTCAATACTAATGACGAGAACACGATTAGTACTAGTGAATATTTGGACCAAGCCATTATAAGCAATTTAAGCACATTGGAATTCAAATGGAATAGTGAATGCttgATTTGTACGGAGCAATTTGAGGAGTACCAGGAATTGCTGGAGCATTGCAAACAGTTCCATAAAAATGAATTCGATGAGTATACATGCACTGTCGGAGATTGTGAGGAGTTAATTGCGGATGAGGATGCGCTTGCCAGGCACTTGGTATTGAGACACAGTGATTTACATAGtaTCAAAATATATGGCAGCTGTACGTTTTGTAATCTACGTTTTTCTAACTTTACTGAACTTAATAAACATTCATGCTATCGTAAAATTAACAGAAAAGCCTGTATACAACCTTACTGCCAATATTGTAAGGAGGAGTTTGTCTCACATAAAAGATTCCTGTTTCACCTGCAATTTCATTTGGCTAAGCGGCGAGCAAAGGTTTGCATGATATGCAACACCGAATTTTCCGATGTGGAAAAGTTTTTCCTACATGTAAATTATGAGCACGAATCATTGGATAAGTTGGCATGTAAAATCTGTGATCGCGTTTTTGCTGATTTGGAGACATACAAGGCACATGAAAACATGCACAAATCAAATCCGAAATACAAATGTGATGAATGcagcaaagtttattataataagaaattattactaaaacacAAGGTTAATTTGCACTCTGCAATTGAGTATGAATGCGACCTGTGTCCGAAAATATTTCCAACTTTCTCTATTTTACAAAATCACTTGAAGTGGCATAACACGGAAGCTGAAGTCCACGTATATACTTGCAGTAATTGTGGCTTGCTTGCAGGTGATTGTGACAAGCTAAAGAAACATATCGCAGATTGCTCCACTGACTGCTTCGAATgcgaaattgaaaatgaaatattgacaGCTGCTTACAGCTGTCATTACTGCGCGCAAGATTTCAAGGATAAATATTCGCTCGGCAAGCATCGTGCTACAGGCGTACATAACAATGAGAAATTCATCTGTCCCATTTGCAATGAAGAGATTGACAGTGTAAAGTCAAAGCGCTtgcatatgtataagcataaagattacaaaaatttccaagagAATCTACCTCTTAAGCGTCTTCTAATGTGTGATGTTGGTgaTTGCGAAGAGTGCTATAGTGACTGGGCGGCCTTGCAGCGGCACAAAACTCGCATACACAAATCAAATACATGCACAAAATGCAATCAAAAGTTAGCTGATGCAGCGGAACTGCAAAAACATATGAAGCAATGCCAAGCGGCTGCATTAACATGTCAGTTTTGTGATAAAGTATGCCCAACAAAAATGTCACTAGCTGTCCATGTAGCTAGAAGACATAATAATAAAAATGTTGTCTGTCCACACTGCTCCGCCGGCTATAAAGATGAACAAACCCTGCAACAACACATAGAGTATTCACACGTGCCTGCGCCTTGTACGAATTGCGAAAAAGTACTCAATTGCAAACGGAATTTGGAGATTCATATGCGTGTGGTGCATGAGACAGAAACCAGATATTTCTGTACGCAATGCAATAAAGGATTCTATCATCGTTCGCAGAGGGATCTGCATGAAGAGAGTGTGCATCCAGACTCGATCTACAAATGCGGCCAATGtaatttcaaaacgaaatatGCCAAGTCTTTGGAAATACACATAGCAAAGCATTTGCAAAAGCTAGAGTTTAAGTGTCCGCACTGTGATAAGTCATTTGGCCGCAAAAACACGCTCACTTTACACATTAAACGACATAAAAACGATAAGCCTTTTAGATGCTTCGATACCATTGTTGATGGCTGCGACGCAGCTTTCATCACACGTCCGCTGTTAAATAACCACATAAAAAGCAAACATTCCGTGCAACAGATTAAAACTAAGAACTCAAGCCAACAAAAGCGTAGACTTGGAACGCAAAGAAAGTCGTGTATAAAGAAAATTGTTACGCAGGAGCCCGCCTCTGAAAATACGGCAATGCTCGAAATCAACTCAAGTGGTACAATGTTGACTGCAGATAGCAGCTTTGCCGATGCTGCGGGTTTGTCACACGCAGTTGATGAGAATTACATGTTGCTCGTGGTGAATGATGAGCAACTGTTGGCACTGGACACTGCAGatatttcagcaaattaa
- Protein Sequence
- MDIAVNKTMSELNSEDDAFFDELIEDENADDESVPNFAFPNLKGDPDLLCEFNTNDENTISTSEYLDQAIISNLSTLEFKWNSECLICTEQFEEYQELLEHCKQFHKNEFDEYTCTVGDCEELIADEDALARHLVLRHSDLHSIKIYGSCTFCNLRFSNFTELNKHSCYRKINRKACIQPYCQYCKEEFVSHKRFLFHLQFHLAKRRAKVCMICNTEFSDVEKFFLHVNYEHESLDKLACKICDRVFADLETYKAHENMHKSNPKYKCDECSKVYYNKKLLLKHKVNLHSAIEYECDLCPKIFPTFSILQNHLKWHNTEAEVHVYTCSNCGLLAGDCDKLKKHIADCSTDCFECEIENEILTAAYSCHYCAQDFKDKYSLGKHRATGVHNNEKFICPICNEEIDSVKSKRLHMYKHKDYKNFQENLPLKRLLMCDVGDCEECYSDWAALQRHKTRIHKSNTCTKCNQKLADAAELQKHMKQCQAAALTCQFCDKVCPTKMSLAVHVARRHNNKNVVCPHCSAGYKDEQTLQQHIEYSHVPAPCTNCEKVLNCKRNLEIHMRVVHETETRYFCTQCNKGFYHRSQRDLHEESVHPDSIYKCGQCNFKTKYAKSLEIHIAKHLQKLEFKCPHCDKSFGRKNTLTLHIKRHKNDKPFRCFDTIVDGCDAAFITRPLLNNHIKSKHSVQQIKTKNSSQQKRRLGTQRKSCIKKIVTQEPASENTAMLEINSSGTMLTADSSFADAAGLSHAVDENYMLLVVNDEQLLALDTADISAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192963;
- 90% Identity
- iTF_00190118;
- 80% Identity
- -