Basic Information

Insect: Bactrocera latifrons
Gene Symbol: ham
Assembly: GCA_001853355.1
Location: NW:519402-553960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0018 0.1 12.6 0.2 2 22 171 191 170 193 0.89

2 9 0.00061 0.034 14.1 2.0 1 23 200 223 200 223 0.93

3 9 1.6e-08 8.8e-07 28.6 0.1 1 23 229 252 229 252 0.96

4 9 4e-06 0.00022 21.0 1.7 1 23 258 280 258 280 0.95

5 9 2.6e-05 0.0014 18.4 4.8 1 23 286 308 286 308 0.99

6 9 6.2e-05 0.0035 17.2 0.6 2 21 316 335 315 336 0.95

7 9 1.7e-09 9.7e-08 31.6 1.0 1 23 827 849 827 849 0.99

8 9 2.5e-07 1.4e-05 24.8 0.9 1 23 855 878 855 878 0.97

9 9 4.3e-05 0.0024 17.7 6.6 1 23 884 906 884 906 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0018	0.1	12.6	0.2	2	22	171	191	170	193	0.89
2	9	0.00061	0.034	14.1	2.0	1	23	200	223	200	223	0.93
3	9	1.6e-08	8.8e-07	28.6	0.1	1	23	229	252	229	252	0.96
4	9	4e-06	0.00022	21.0	1.7	1	23	258	280	258	280	0.95
5	9	2.6e-05	0.0014	18.4	4.8	1	23	286	308	286	308	0.99
6	9	6.2e-05	0.0035	17.2	0.6	2	21	316	335	315	336	0.95
7	9	1.7e-09	9.7e-08	31.6	1.0	1	23	827	849	827	849	0.99
8	9	2.5e-07	1.4e-05	24.8	0.9	1	23	855	878	855	878	0.97
9	9	4.3e-05	0.0024	17.7	6.6	1	23	884	906	884	906	0.98

Sequence Information

Coding Sequence: AtgcgtaaactgacgttgagcaataccacaAGCTCCATCAAGATCGGGAAGGAAATCTCCGTGCCCTTCGTAACCAAATGCTTTTTGCAACAGGTCATTGCAGGTCCACATTTCCGCGGCTGGTTGGAACCGTCACAAGATGTTGCGACGTGGCTGCGCAAAATACGCACTGTCGACAATGATGGAGAGGCTAATCTGAAGAACTTCCTGGTGACAGGATATCTTTGGTATGAAACAAATCGTGATATAAATGCCGGCGAGGAAATCACCATCGATGGACGGCCGCGCACACCCATACACCTAAACGATGGCTTCGCCAATGGCGCCGATGCGGGCACGTTAAACRCGACGAGCGGGTCCCTGCAAGGCGATGATAAGAGCGAACGTGATAATGgatCTCTCTACAGTGGCGGCAACACCACAGGCGACGACGAGTACAACCGTGAGCGTTCGTTTAGCGAGAAAGCGGATTGCCTTGATTTGACCGACGACGAAAACGGTTTCGACATACGTTGTGAAGTTTGTGATAAAACATTTCCGGAACTAGACGAGTTGGACCATCATTTGGTTGCTAAGCACTCGTTTCGTAAAGACGAGTTTCCCTGTGAGTTGTGCAACAAGCCATTTTGTCATCGTCCTTTATTACTGAAGCATCGCGCCTTAGAGCACAACGAAGTTCGAAAGTATCCCTGTGAGAATTGCCCAAAGGTATTTCGTGATCCATCGAATTTACAGCGGCATATTCGTGCCAACCACATCGGTGCCAGAAGTCACGCGTGTCCGGAGTGCGGAAAAACATTTGGTACATCGTCCGGCCTCAAGCAGCATACGCACATCCACTCGTCGGTGAAGCCGTTTCAGTGTGAGGTGTGTTACAAGGCGTATACGCAATTCTCGAATTTATGCCGTCATAAGCGCATGCACGCCGATTGTCGCATGCAAATCAGATGTCCTAAGTGCGGCCAAAGCTTCAGCACGGGTACCTCGTTAACCAAGCACAAGCGTTTTTGTGACCCCACCAACGTGCCGCTGCCACCACAGCCCGTCTCTGCCGGTTCCGGTGTGAATTTGCCACCACATTTGCCGACGCACCAACAGCAAGTCATGCAGTCTCGCGTCTTACAATCGATGAGTGCGGCCGTCGCTGCCGCCACGGGTAATACCAATGGCACAGGCGCTGGTCTGCCAGGTAGTGGCATGTCGCCAGCCGACCATCCGTTCGTGCTGTTTCCGCCGTTCTTTCCGAATTTTCCAACCGCCACCGCCCCCTACGGATTGCCGGGCATATTTCCGTCAAGCTCAGCGCAGGCAACCAACTTCCCGTTCATGTTTCCGAAAACCAATTTGGAAATGTGTATGCTCGGTATGCCGACGCCAAGTGGTCACAATACATTCAGCAGTTTGCCGTCTATGAAAGGTAGACGGCTTCACAATTTGAACGCTGGCGAGAGTATGCGCTCGGGTGACGTATCACCGCCGTCGAGTGAGCACAGCCTAAAGCAATCGAATAGTAATGCTAACGCCACACTAAGTCTAGCCACGGATACTGATGAAAATGGCAAAATACCAACACCACTTGCGCTGACGTTGGCTTGTAATTCACCAAATTTCAATGCCAATCAAAACAGTTTCTCCACACACAATCCAAGTGATGAGGATACCAGTTCGTCTGTGGAActaaaaatcacacaaaatgaTGACGTCGAAGTGCAGGAGCAAGCAGAAGTTGAGGAGCCAGCAGATATGTCAAAGTTTGAGAYCAGCACCAACAAACTTATTGAAGATGATAAGAAATCGATTGATATAATGAGCACTCCACCGCCCGCAGACCCGTCAGATGAAGAAAACAGCAAAGCCACAAATAGCGCCGCTGCTGCAGAACTGCCACTCGATTTGAGTATTGGTCGCAAGCGCGCACGCACMACCAGCTCCAGTTCAACTGCCGACACACAATCGGTACATAGCGAACGCTCCAGCAACCAGGCCACGCAAGCCGAGCACAAGTCTGATTGCGAGCAACAACCSGAGTCCAACCTAATACGCTCACATCACCAGAAATTACTCAGGCGTTCAAGCCACAAAATATCAAACCGTCGTTGYGAGAAGCTCAATCGTACACCCTCGATTACCGCCTCGCCTGGGCCGACACCATCACCTTCGCCACCCAGCAAAGAGCAAGTGAATTTACTGTCAAACGATGTGAATTCCTCAGCGTCGGCCGACTTTGATTGCTTGCAACCGTTAGAACGAAATCCGCTTTTCTTGGAAGAGATCTATCATCGTTCGCGCACGCTAAACGATATCTTTCCACGCCCGTTTCCTTTTTTAGGGTCAATGGGCGGACGGCCAGCCTTTGATAGAGCATTACAATGCTCTGACATGCCGTTTCCGCCCGAACCGGTTTTTCGCAAAAATCTACTACCTGCCGGTCTCATCGGCAGCATGTTGGCCACGGCCTCCGGCAAAATCAAGGATCGCTACACTTGCAAGTACTGTGGCAAGGTATTTCCGCGTTCAGCCAATTTGACACGTCACGTGCGCACACACACCGGCGAACAGCCCTACACGTGTAAGTACTGCGATCGTGCTTTCAGCATTTCGTCTAACCTGCAACGTCATGTACGCAACATACACAATAAGGAGCGTCCGTTCCGCTGTCATCTGTGCGATCGCTGTTTTGGTCAGCAAACGAATCTCGACCGACATCTGAAGAAACACGAAGCCGACACGAACGGTTTGGGTATTGGTTTCGGYGACTCGCCATCCTCCAATGAGGCCGATCGTGAGGACAACTATCTCGATGAGATACGCTCTTTCATGGGTCAAGGCACATACAGCGAAGAACAGTACACACCGACGAGTATTGGTGGCGCCGAAAACGACACCGACTATGCGGGCAGCGATGCAGACGTGGAGTTGTCCGTCTCGCGTTCATCGTCAGTCGATGCTGTGTTGCCTGTTGGTAGYGGTGAGGATGCCGTGCACGTAAAGCAAGAGCCRTCGGCAGATGCGACGAAAAGCAGCGACGCGGTCGATGTAAGCTCGTAA
Protein Sequence: MRKLTLSNTTSSIKIGKEISVPFVTKCFLQQVIAGPHFRGWLEPSQDVATWLRKIRTVDNDGEANLKNFLVTGYLWYETNRDINAGEEITIDGRPRTPIHLNDGFANGADAGTLNXTSGSLQGDDKSERDNGSLYSGGNTTGDDEYNRERSFSEKADCLDLTDDENGFDIRCEVCDKTFPELDELDHHLVAKHSFRKDEFPCELCNKPFCHRPLLLKHRALEHNEVRKYPCENCPKVFRDPSNLQRHIRANHIGARSHACPECGKTFGTSSGLKQHTHIHSSVKPFQCEVCYKAYTQFSNLCRHKRMHADCRMQIRCPKCGQSFSTGTSLTKHKRFCDPTNVPLPPQPVSAGSGVNLPPHLPTHQQQVMQSRVLQSMSAAVAAATGNTNGTGAGLPGSGMSPADHPFVLFPPFFPNFPTATAPYGLPGIFPSSSAQATNFPFMFPKTNLEMCMLGMPTPSGHNTFSSLPSMKGRRLHNLNAGESMRSGDVSPPSSEHSLKQSNSNANATLSLATDTDENGKIPTPLALTLACNSPNFNANQNSFSTHNPSDEDTSSSVELKITQNDDVEVQEQAEVEEPADMSKFEXSTNKLIEDDKKSIDIMSTPPPADPSDEENSKATNSAAAAELPLDLSIGRKRARTTSSSSTADTQSVHSERSSNQATQAEHKSDCEQQPESNLIRSHHQKLLRRSSHKISNRRCEKLNRTPSITASPGPTPSPSPPSKEQVNLLSNDVNSSASADFDCLQPLERNPLFLEEIYHRSRTLNDIFPRPFPFLGSMGGRPAFDRALQCSDMPFPPEPVFRKNLLPAGLIGSMLATASGKIKDRYTCKYCGKVFPRSANLTRHVRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHEADTNGLGIGFGDSPSSNEADREDNYLDEIRSFMGQGTYSEEQYTPTSIGGAENDTDYAGSDADVELSVSRSSSVDAVLPVGSGEDAVHVKQEPSADATKSSDAVDVSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01563947;
90% Identity: iTF_00193734; iTF_00192960;
80% Identity: -